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16 series

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Accession	Title	Series type(s)	Organism(s)	Samples	GDS	Supplementary	Contact	Release date
Filter		Genome binding/occupancy profiling by high throughput sequencing	Danio rerio			TSV
GSE241159	Interspecies comparison reveals Hmga1 as driver of cardiac regeneration	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Danio rerio Mus musculus	42		BW CSV TSV	Mara Bouwman	Nov 15, 2024
GSE223636	Differential Nodal level promotes mesendoderm cell fate segregation mediated by chromatin organization	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Danio rerio	4		TAR TSV	Tao cheng	Jan 28, 2023
GSE140241	Zebrafish periderm at 4-somite stage	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Danio rerio	10		BED BW TSV	Robert Cornell	Jan 13, 2020
GSE178969	Single-cell profiling of cranial neural crest diversification across a vertebrate lifetime	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Danio rerio	26		MTX TSV SRA Run Selector	Gage Crump	Nov 11, 2021
GSE268179	Large-scale screen of novel zebrafish retinal ganglion cell ablation model reveals genetic regulation of retinal regeneration is context specific	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Danio rerio	20		H5 MTX TBI TSV	Kevin Emmerich	May 27, 2024
GSE184035	Single-cell profiling of histone modifications and transcription in developmental systems with EpiDamID [zebrafish]	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Danio rerio	17		TSV SRA Run Selector	Jop Kind	Apr 01, 2022
GSE184036	Single-cell profiling of histone modifications and transcription in developmental systems with EpiDamID	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Danio rerio Homo sapiens Mus musculus	155		BEDGRAPH BROADPEAK HDF5 NARROWPEAK TSV	Jop Kind	Apr 01, 2022
GSE152423	Multi-modal characterization of chromatin architecture from 24 hpf whole zebrafish embryos	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Danio rerio	21		BED BW MTX NARROWPEAK TSV SRA Run Selector	Scott Allen Lacadie	Sep 23, 2021
GSE200503	Single cell analysis of zebrafish marrow in WT and gata2a mutant animals	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Danio rerio	10		CSV RDS TSV	Rui Monteiro	Apr 11, 2022
GSE233198	Differential programs of melanocyte cell states	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Danio rerio Homo sapiens Mus musculus	20		BED BW MTX NARROWPEAK TBI TSV	Vivek T Natarajan	Jul 05, 2024
GSE223535	scMultiome analysis identifies embryonic hindbrain progenitors with mixed rhombomere identities	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Danio rerio	10		H5 RDS TSV	rebecca L orourke	Aug 08, 2023
GSE273764	Long-range Atoh1 enhancers maintain competency for hair cell regeneration in the inner ear	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Anolis carolinensis Danio rerio	4		BIGWIG H5 TBI TSV	Tuo Shi	Nov 27, 2024
GSE148783	Gain of gene regulatory network interconnectivity at the origin of vertebrates	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Branchiostoma lanceolatum Danio rerio Ptychodera flava Xenopus tropicalis	75		TSV TXT	Juan J. Tena	Feb 26, 2022
GSE261907	Common and Specific Gene Regulatory Programs in Zebrafish Caudal Fin Regeneration at Single-Cell Resolution	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Danio rerio	20		MTX TBI TSV	Ting Wang	Nov 01, 2024
GSE124151	Transcription factor induction of vascular blood stem cell niches in vivo	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Danio rerio	35		TSV	Leonard Zon	Mar 23, 2023
GSE213360	A chronic signaling TGFb zebrafish reporter identifies immune response in melanoma	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Danio rerio Homo sapiens	40		NARROWPEAK TSV	Leonard Zon	Jun 13, 2024