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2586 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Genome binding/occupancy profiling by high throughput sequencing	Drosophila melanogaster
GSE19824	Genome-wide evolutionary analysis of eukaryotic DNA methylation	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Volvox carteri Uncinocarpus reesii Tribolium castaneum Tetraodon nigroviridis Selaginella moellendorffii Postia placenta Physcomitrium patens Phycomyces blakesleeanus Oryza sativa Nematostella vectensis Laccaria bicolor Drosophila melanogaster Coprinopsis cinerea Ciona intestinalis Chlorella variabilis Bombyx mori Apis mellifera	33	GFF TXT SRA Run Selector	Toshiro Nishimura	Apr 15, 2010
GSE60378	Calibrating ChIP-seq with nucleosomal internal standards to measure histone modification density genome-wide	Genome binding/occupancy profiling by high throughput sequencing	synthetic construct Mus musculus Homo sapiens Drosophila melanogaster	27	BIGWIG SRA Run Selector	Alexander Ruthenburg	May 07, 2015
GSE184454	Transcription factor paralogs orchestrate alternative gene regulatory networks by context-dependent cooperation with multiple cofactors	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	synthetic construct Drosophila melanogaster	61	BIGWIG PDF TXT SRA Run Selector	Siqian Feng	May 23, 2022
GSE193224	A giant virus genome is densely packaged by stable nucleosomes	Genome binding/occupancy profiling by high throughput sequencing	synthetic construct Marseillevirus marseillevirus Drosophila melanogaster	117	BED BEDGRAPH BIGWIG FASTA PDF	Jorja Henikoff	Sep 27, 2022
GSE218852	Chromatin accessibility in the Drosophila embryo is determined by transcription factor pioneering and enhancer activation	Genome binding/occupancy profiling by high throughput sequencing Other	synthetic construct Drosophila melanogaster	70	BW NARROWPEAK TXT	Kaelan Joseph Brennan	Dec 20, 2022
GSE180591	Set1 targets gene with essential identity and tumor suppressing functions in planarian stem cells. Mnase-ChIP was used to validate a wide histone H3K4me3 peak width signature.	Genome binding/occupancy profiling by high throughput sequencing Other	Schmidtea mediterranea Drosophila melanogaster	2	BED SRA Run Selector	Elizabeth Duncan	Jul 26, 2021
GSE44200	Mot1 redistributes TBP from TATA-containing to TATA-less promoters	Genome binding/occupancy profiling by high throughput sequencing	Saccharomyces cerevisiae Drosophila melanogaster	20	BED BEDGRAPH WIG SRA Run Selector	Jorja Henikoff	Oct 21, 2013
GSE45672	High-resolution mapping of transcription factor binding sites on native chromatin	Genome binding/occupancy profiling by high throughput sequencing	Saccharomyces cerevisiae Drosophila melanogaster	24	BED BEDGRAPH RTF SRA Run Selector	Jorja Henikoff	Dec 14, 2013
GSE187007	G4access identifies G-quadruplexes and their associations with open chromatin and imprinting control regions. Nat Genet (2023). https://doi.org/10.1038/s41588-023-01437-4	Genome binding/occupancy profiling by high throughput sequencing Other Expression profiling by high throughput sequencing	Saccharomyces cerevisiae Mus musculus Homo sapiens Drosophila melanogaster	63	BED WIG SRA Run Selector	Amal Makrini	Apr 14, 2023
GSE153116	CASB: A concanavalin A-based sample barcoding strategy for single-cell sequencing	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Rattus norvegicus Mus musculus Homo sapiens Drosophila melanogaster Cricetulus griseus Chlorocebus sabaeus Canis lupus familiaris	197	H5	Guipeng Li	Mar 09, 2021
GSE121855	Application of Chromatrap® Solid-State Chromatin Immunoprecipitation (ChIP) for epigenetic profiling of insects	Genome binding/occupancy profiling by high throughput sequencing	Nicrophorus vespilloides Drosophila melanogaster	16	BED SRA Run Selector	Tomas Nicholas Generalovic	Oct 27, 2018
GSE29183	Genome-scale analysis of metazoan replication origins reveals their organization in specific but flexible sites defined by conserved features.	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus Drosophila melanogaster	5	PAIR	Christelle Cayrou	Jul 28, 2011
GSE32120	The little elongation complex (LEC) regulates small nuclear RNA transcription	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Expression profiling by array	Mus musculus Drosophila melanogaster	22	BED CEL SRA Run Selector	Alexander (Garrett) Garruss	Dec 22, 2011
GSE34304	Poised RNA Polymerase II changes over developmental time and prepares genes for future expression	Expression profiling by array Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus Drosophila melanogaster	89	BAM BED CEL	Julia Zeitlinger	Dec 20, 2012
GSE41440	Enhancer-associated H3K4 mono-methylation by Drosophila Trithorax-related, the Drosophila homolog of Mll3/Mll4	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus Drosophila melanogaster	45	BED TAB SRA Run Selector	Alexander (Garrett) Garruss	Dec 01, 2012
GSE67454	A simple method for generating high-resolution maps of genome wide protein binding	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus Homo sapiens Drosophila melanogaster	5	BED WIG SRA Run Selector	Jorja Henikoff	Jun 12, 2015
GSE69291	H3K36 mutations promote sarcomagenesis through genome-wide remodeling of H3K36 and H3K27 methylation	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus Homo sapiens Drosophila melanogaster	69		Peter W Lewis	May 13, 2016
GSE75855	H3K36 mutations promote sarcomagenesis through genome-wide remodeling of H3K36 and H3K27 methylation [H31_ChIP-Rx]	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus Drosophila melanogaster	6	TXT SRA Run Selector	Peter W Lewis	May 13, 2016
GSE78984	MNase titration reveals differences between nucleosome occupancy and chromatin accessibility	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus Homo sapiens Drosophila melanogaster	74	BEDGRAPH SRA Run Selector	Michael Tolstorukov	Apr 18, 2016
GSE82312	RNA-Chromatin Interactome Reveals Enhancer-Promoter Connectivity in 3D Genome	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus Homo sapiens Drosophila melanogaster	12	TXT SRA Run Selector	Bing Zhou	Aug 29, 2017