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73 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Genome binding/occupancy profiling by high throughput sequencing	Escherichia coli
GSE168968	A CTP-dependent gating mechanism enables ParB spreading on DNA	Genome binding/occupancy profiling by high throughput sequencing	Caulobacter vibrioides Escherichia coli	8	TXT SRA Run Selector	Tung Ba Khanh Le	May 01, 2021
GSE216481	A Transcription Factor Atlas of Directed Differentiation	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Escherichia coli Homo sapiens Lentivirus	281	CSV MTX TSV	Julia Joung	Jan 05, 2023
GSE182079	A chromatin immunoprecipitation database for prokarytic organisms	Genome binding/occupancy profiling by high throughput sequencing	Escherichia coli Escherichia coli K-12 Klebsiella pneumoniae Pseudomonas putida Salmonella enterica Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 Shigella flexneri Staphylococcus aureus Yersinia pseudotuberculosis	102	GFF	Ye Gao	Aug 17, 2021
GSE181770	A chromatin immunoprecipitation database for prokarytic organisms [fur]	Genome binding/occupancy profiling by high throughput sequencing	Escherichia coli Klebsiella pneumoniae Salmonella enterica Shigella flexneri Yersinia pseudotuberculosis	14	GFF SRA Run Selector	Ye Gao	Aug 15, 2021
GSE193736	A genome-scale screen for synthetic drivers of T-cell proliferation	Other Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Escherichia coli Homo sapiens	44	CSV	Neville Sanjana	Jan 21, 2022
GSE174575	Bacterial Heterochromatin Formation Through Liquid-Liquid Phase Separation	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Escherichia coli	36	BED CSV TSV SRA Run Selector	Lydia Freddolino	Dec 23, 2021
GSE58623	BolA is a transcriptional switch that turns off motility and turns on biofilm development (ChIP-seq)	Genome binding/occupancy profiling by high throughput sequencing	Escherichia coli	2	TXT SRA Run Selector	Cecilia M. Arraiano	Feb 19, 2015
GSE104505	CRP and FIS	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Escherichia coli Escherichia coli str. K-12 substr. MG1655	36	BED	Parul Singh	Oct 03, 2017
GSE162597	CRP(T168P) and AC(S254R) mutant strain of E. coli W	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Escherichia coli	14	GFF HTML TXT	Sang Woo Seo	Aug 23, 2021
GSE217006	Cas9 off-target binding to the promoter of bacterial genes leads to silencing and toxicity	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Escherichia coli	18	BED	David Bikard	Nov 01, 2022
GSE217004	Cas9 off-target binding to the promoter of bacterial genes leads to silencing and toxicity [ChIP-Seq]	Genome binding/occupancy profiling by high throughput sequencing	Escherichia coli	9	BED	David Bikard	Nov 04, 2022
GSE182850	ChIP-Seq of RNAP in E. coli DY330	Genome binding/occupancy profiling by high throughput sequencing	Escherichia coli	2	BROADPEAK WIG SRA Run Selector	Dmitry Sutormin	Jan 01, 2022
GSE181915	ChIP-Seq of topoisomerase I in E. coli DY330	Genome binding/occupancy profiling by high throughput sequencing	Escherichia coli	22	NARROWPEAK WIG SRA Run Selector	Dmitry Sutormin	Jan 01, 2022
GSE69250	Condensin mediates the chromosomal clustering of highly transcribed genes in bacteria	Genome binding/occupancy profiling by high throughput sequencing	Escherichia coli	6	TXT SRA Run Selector	Long Cai	May 29, 2015
GSE84830	Data Exploration, Quality Control and Statistical Analysis of ChIP-exo/nexus Experiments	Genome binding/occupancy profiling by high throughput sequencing	Escherichia coli	8	WIG SRA Run Selector	Rene Welch	Mar 01, 2017
GSE66482	Decoding genome-wide GadEWX transcriptional regulatory networks reveals a multifaceted cellular response to acid stress in Escherichia coli	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Escherichia coli Escherichia coli str. K-12 substr. MG1655	16	GFF	Donghyuk Kim	Aug 11, 2015
GSE158683	DeepTFactor, a deep learning-based tool for the identification of transcription factors	Genome binding/occupancy profiling by high throughput sequencing	Escherichia coli	6	GFF SRA Run Selector	Ye Gao	Oct 09, 2020
GSE179963	Distribution of Holliday Junctions and Repair Forks during Escherichia coli DNA Double-Strand Break Repair	Genome binding/occupancy profiling by high throughput sequencing	Escherichia coli	2	BEDGRAPH SRA Run Selector	Benura Azeroglu	Jul 29, 2021
GSE129285	Diversification of DNA-binding specificity via permissive and specificity-switching mutations in the ParB/Noc protein family	Genome binding/occupancy profiling by high throughput sequencing Other	Escherichia coli	30	TXT SRA Run Selector	Tung Ba Khanh Le	Aug 05, 2019
GSE100817	Division-induced DNA double strand breaks in the chromosome terminus region of Escherichia coli lacking RecBCD DNA repair enzyme	Genome binding/occupancy profiling by high throughput sequencing	Escherichia coli	4	BEDGRAPH SRA Run Selector	David Leach	Sep 28, 2017