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89 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Genome binding/occupancy profiling by high throughput sequencing	Saccharomyces cerevisiae		BED
GSE56700	ChIP-chip data of Thp1-Flag and Sac3-Flag in wild-type cells, and Rrm3-Flag in sac3∆ and thp1∆ cells	Genome binding/occupancy profiling by high throughput sequencing	Saccharomyces cerevisiae	6	BAR BED CEL	Andrés Aguilera	Oct 08, 2014
GSE16926	ORC precisely positions nucleosomes at origins of replication	Genome binding/occupancy profiling by high throughput sequencing	Saccharomyces cerevisiae	5	BED PDF TXT SRA Run Selector	Matthew Lucas Eaton	Mar 19, 2010
GSE20870	The telomere-binding protein Tbf1 demarcates snoRNA gene promoters in Saccharomyces cerevisiae	Genome binding/occupancy profiling by high throughput sequencing	Saccharomyces cerevisiae	2	BED BEDGRAPH MAP SRA Run Selector	Jacques Rougemont	May 28, 2010
GSE26449	Genome-wide mapping of meiotic double-strand breaks by sequencing Spo11 oligos.	Genome binding/occupancy profiling by high throughput sequencing	Saccharomyces cerevisiae	4	BED TXT SRA Run Selector	Scott Keeney	Mar 07, 2011
GSE29026	Mnase-seq for six histone mutants and two wild-types in S. cerevisiae	Genome binding/occupancy profiling by high throughput sequencing	Saccharomyces cerevisiae	8	BED	Inkyung Jung	Dec 05, 2012
GSE29064	Structural mapping of regulatory function of histone H3 and H4 residues	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by array	Saccharomyces cerevisiae	135	BED PAIR TXT	Inkyung Jung	Dec 05, 2012
GSE29291	Effects of Histone H3 depletion on nucleosome occupancy and positioning through the S. cerevisiae genome [single-end MNase-seq]	Genome binding/occupancy profiling by high throughput sequencing	Saccharomyces cerevisiae	6	BED TXT SRA Run Selector	Jason D Lieb	Sep 26, 2012
GSE29292	Effects of Histone H3 depletion on nucleosome occupancy and positioning through the S. cerevisiae genome [Paired-end Mnase-seq]	Genome binding/occupancy profiling by high throughput sequencing	Saccharomyces cerevisiae	8	BED TXT SRA Run Selector	Jason D Lieb	Sep 26, 2012
GSE29294	Effects of Histone H3 depletion on nucleosome occupancy and positioning through the S. cerevisiae genome	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Saccharomyces cerevisiae	20	BED TXT WIG	Jason D Lieb	Sep 26, 2012
GSE31466	Centromere-Like Regions in Budding Yeast	Genome binding/occupancy profiling by high throughput sequencing	Saccharomyces cerevisiae	13	BED SGR TXT SRA Run Selector	Raymond K Auerbach	Jan 18, 2013
GSE33466	Open chromatin maps of genetically different yeast strains	Genome binding/occupancy profiling by high throughput sequencing	Saccharomyces cerevisiae	96	BED SRA Run Selector	kwoneel kim	Nov 02, 2012
GSE34923	In vivo nucleosome occupancy in yeast (MNase-seq)	Genome binding/occupancy profiling by high throughput sequencing	Saccharomyces cerevisiae	2	BED SRA Run Selector	kwoneel kim	Jan 06, 2013
GSE36334	Co-dependency of H2B monoubiquitination and nucleosome re-assembly on Chd1	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Saccharomyces cerevisiae	10	BED SRA Run Selector	Alexander (Garrett) Garruss	May 02, 2012
GSE37465	Global Regulation of Nucleosome Organization And Transcription By The Yeast Ssn6-Tup1 Corepressor (MNase-Seq)	Genome binding/occupancy profiling by high throughput sequencing	Saccharomyces cerevisiae	9	BED WIG SRA Run Selector	kaifu chen	Oct 10, 2012
GSE37467	Global Regulation of Nucleosome Organization And Transcription By The Yeast Ssn6-Tup1 Corepressor	Expression profiling by array Genome binding/occupancy profiling by high throughput sequencing	Saccharomyces cerevisiae Schizosaccharomyces pombe	16	BED CEL WIG	kaifu chen	Oct 10, 2012
GSE38032	Mcm2-7 is an Active Player in the DNA Replication Checkpoint Signaling Cascade via Proposed Modulation of its DNA Gate	Genome binding/occupancy profiling by high throughput sequencing	Saccharomyces cerevisiae	16	BED WIG SRA Run Selector	David M MacAlpine	Apr 20, 2015
GSE40255	The p23 molecular chaperone and GCN5 acetylase jointly modulate protein-DNA dynamics and open chromatin status.	Genome binding/occupancy profiling by high throughput sequencing	Saccharomyces cerevisiae	3	BED SRA Run Selector	Brian Freeman	Aug 23, 2012
GSE41494	Hog1 bypasses stress-mediated down-regulation of transcription by PolII redistribution and chromatin remodeling	Genome binding/occupancy profiling by high throughput sequencing	Saccharomyces cerevisiae	15	BED SRA Run Selector	Francesc Posas	Oct 30, 2012
GSE43737	The Replication Kinase Cdc7 Marks Histones to Regulate Biosynthesis Genes	Genome binding/occupancy profiling by high throughput sequencing	Saccharomyces cerevisiae	4	BED SRA Run Selector	Stephen Aurelien Hoang	Jan 09, 2022
GSE44200	Mot1 redistributes TBP from TATA-containing to TATA-less promoters	Genome binding/occupancy profiling by high throughput sequencing	Drosophila melanogaster Saccharomyces cerevisiae	20	BED BEDGRAPH WIG SRA Run Selector	Jorja Henikoff	Oct 21, 2013