GEO Browser - GEO

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44 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Genome binding/occupancy profiling by high throughput sequencing	Zea mays		SRA Run Selector
GSE142847	ADHERENT1 IS A 3-KETOACYL CoA SYNTHASE REQUIRED FOR MAIZE CUTICLE DEVELOPMENT AND ORGAN SEPARATION	Genome binding/occupancy profiling by high throughput sequencing	Zea mays	1	BIGWIG NARROWPEAK SRA Run Selector	Andrea Gallavotti	Jun 01, 2020
GSE152074	Structure, composition and evolution of the nonvital B chromosome of maize	Genome binding/occupancy profiling by high throughput sequencing	Zea mays	1	BEDGRAPH SRA Run Selector	Handong Su	May 22, 2021
GSE157151	Characterization of distinct types of open chromatin and their impacts on gene transcription in maize [ChIP-seq]	Genome binding/occupancy profiling by high throughput sequencing	Zea mays	1	BED BW SRA Run Selector	Wenli Zhang	Aug 27, 2023
GSE183303	DAP-seq was used to generate genome-wide DNA:TF interaction maps for ZmMYB73/DED1	Genome binding/occupancy profiling by high throughput sequencing	Zea mays	1	BIGWIG NARROWPEAK XLSX SRA Run Selector	Dawei Dai	Jun 10, 2022
GSE63991	Genome-wide characterization of cis-acting DNA targets of Opaque2 in maize	Genome binding/occupancy profiling by high throughput sequencing	Zea mays	2	BED TXT SRA Run Selector	Chaobin Li	Mar 06, 2015
GSE84368	Genomic features shaping the landscape of meiotic double-strand break hotspots in maize [MNase-Seq]	Genome binding/occupancy profiling by high throughput sequencing	Zea mays	2	BED SRA Run Selector	Wojciech Pawlowski	Jul 13, 2016
GSE152046	Stable unmethylated DNA demarcates expressed genes and their cis-regulatory space in plant genomes	Genome binding/occupancy profiling by high throughput sequencing	Zea mays	2	BED TXT SRA Run Selector	Robert J Schmitz	Aug 22, 2020
GSE157149	Characterization of distinct types of open chromatin and their impacts on gene transcription in maize [MH-seq]	Genome binding/occupancy profiling by high throughput sequencing	Zea mays	2	BW NARROWPEAK SRA Run Selector	Wenli Zhang	Aug 27, 2023
GSE43138	Fine structure analysis and epigenetic properties of a de novo centromere on a chromosome fragment in maize	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Zea mays	3	BED TXT SRA Run Selector	Junling Pang	Jun 25, 2013
GSE120491	Assessing chromatin accessibility in maize with ATAC-seq	Genome binding/occupancy profiling by high throughput sequencing	Zea mays	3	BW SRA Run Selector	Pao-Yang Chen	Jan 23, 2019
GSE124242	De novo formation in maize from irradiated materials	Genome binding/occupancy profiling by high throughput sequencing	Zea mays	3	BED COV SRA Run Selector	Handong Su	Dec 21, 2019
GSE157150	Characterization of distinct types of open chromatin and their impacts on gene transcription in maize [MNase-seq]	Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana Zea mays	3	BED BW SRA Run Selector	Wenli Zhang	Aug 27, 2023
GSE38587	The P1 Transcription Factor Binding to the Genome	Genome binding/occupancy profiling by high throughput sequencing	Zea mays	4	BED SRA Run Selector	Erich Grotewold	Sep 14, 2012
GSE43140	Functional centromere lost centromeric specific sequences but gain new sequences from nearby chromosomal arm.	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Zea mays	4	BED TXT SRA Run Selector	Junling Pang	Jun 25, 2013
GSE102051	Genome-wide characterization of cis-acting DNA targets of Opaque11 in maize	Genome binding/occupancy profiling by high throughput sequencing	Zea mays	4	BED TXT SRA Run Selector	Liming Xu	Apr 09, 2018
GSE76533	Epigenetic characteristics and gene-expression analysis of Derivative 3-3 de novo centromere in maize	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Zea mays	5	DIFF TXT SRA Run Selector	Handong Su	Aug 05, 2016
GSE39161	Unraveling the KNOTTED1 regulatory network in maize meristems (ChIP-seq)	Genome binding/occupancy profiling by high throughput sequencing	Zea mays	6	BED SRA Run Selector	Erich Grotewold	Sep 04, 2012
GSE59124	Sequential centromere shift via de novo formation in maize	Genome binding/occupancy profiling by high throughput sequencing	Zea mays	6	BEDGRAPH SRA Run Selector	Handong Su	Mar 03, 2015
GSE67551	Comparative histone modification profiling revealed developmentally regulated acetylation on upstream promoters of C4 genes and potential C4 regulators	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Zea mays	6	TXT SRA Run Selector	Christoph Peterhansel	Sep 03, 2015
GSE94291	Genome-wide chromatin accessibility profiling in maize using DNase-seq on two different tissues: inner stem tissue of V2 seedlings and husk	Genome binding/occupancy profiling by high throughput sequencing	Zea mays	6	BED BW SRA Run Selector	Johan Zicola	Jul 03, 2017