GEO Browser - GEO

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55 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Genome binding/occupancy profiling by high throughput sequencing	Oryza sativa		SRA Run Selector
GSE19602	Global Epigenetic and Transcriptional Trends among Two Rice Subspecies and Their Reciprocal Hybrids.	Non-coding RNA profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Oryza sativa	24	BED TAR SRA Run Selector	guangming he	Jan 20, 2010
GSE27048	Genome-wide maps of chromatin state in rice endosperm	Genome binding/occupancy profiling by high throughput sequencing	Oryza sativa	2	BED WIG SRA Run Selector	Feng Tan	Dec 06, 2011
GSE40054	ChIP-seq analysis of SRT1 and H3K9ac in MH63 and srt1 RNAi.	Genome binding/occupancy profiling by high throughput sequencing	Oryza sativa	3	BED TXT WIG XLS SRA Run Selector	zhong xiaochao	Feb 10, 2013
GSE72186	Genome-wide characterization of cis-acting DNA targets of OsNF-YB1 in rice	Genome binding/occupancy profiling by high throughput sequencing	Oryza sativa	4	BED TXT SRA Run Selector	Jingjng Xu	Dec 16, 2016
GSE79033	Functional characterization of open chromatin in bidirectional promoters of rice	Genome binding/occupancy profiling by high throughput sequencing	Oryza sativa	6	BED WIG SRA Run Selector	Fang Yuan	Jan 26, 2017
GSE101482	ATAC-seq profiling of open chromatin in the root tips of four plant species (Arabidopsis thaliana, Medicago truncatula, Solanum lycopersicum, and Oryza sativa) and two Arabidopsis thaliana cell types (root hair and non-hair epidermal cells)	Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana Medicago truncatula Oryza sativa Solanum lycopersicum	15	BED SRA Run Selector	Roger B Deal	Jul 26, 2017
GSE107827	de novo re-construction of the core genome from ChIP-Seq for large-genome organisms	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Oryza sativa Oryza sativa Indica Group Oryza sativa Japonica Group Triticum aestivum	26	BED TXT SRA Run Selector	yijing zhang	May 27, 2018
GSE114090	ATAC-seq profiling of open chromatin with global epigenetic and transcriptional trends in two-line hybrid rice	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Oryza sativa	28	BED TXT WIG SRA Run Selector	jin jing	Dec 31, 2019
GSE114287	Modulating plant growth-metabolism coordination for sustainable agriculture	Genome binding/occupancy profiling by high throughput sequencing	Oryza sativa	3	BED SRA Run Selector	Shan Li	Aug 15, 2018
GSE132775	Characterization of G-quadruplexes in the rice genome	Genome binding/occupancy profiling by high throughput sequencing	Oryza sativa	7	BED WIG XLSX SRA Run Selector	Pengyue Zhang	Jul 01, 2021
GSE144419	Genome-wide mapping of OsHOX24-binding sites in rice	Genome binding/occupancy profiling by high throughput sequencing	Oryza sativa	16	BED SRA Run Selector	Mukesh Jain	Apr 04, 2021
GSE144564	Reorganization of 3D chromatin architecture of rice genomes during heat stress (ATAC-Seq)	Genome binding/occupancy profiling by high throughput sequencing	Oryza sativa	8	BED SRA Run Selector	Xiaofeng Gu	Feb 26, 2021
GSE155265	ChIP-Seq of H2A.Z and H3	Genome binding/occupancy profiling by high throughput sequencing	Oryza sativa	12	BED BIGWIG SRA Run Selector	Liufan Yin	Oct 15, 2020
GSE155266	ChIP-Seq of OsChz1-MYC	Genome binding/occupancy profiling by high throughput sequencing	Oryza sativa	8	BED BIGWIG SRA Run Selector	Liufan Yin	Oct 15, 2020
GSE166665	Understanding the nitrate responsive regulatory modules in Rice [MADS27OE, ChIP-seq]	Genome binding/occupancy profiling by high throughput sequencing	Oryza sativa	4	BEDGRAPH XLS SRA Run Selector	Shivaprasad Padubidri V.	Apr 01, 2022
GSE143721	Diurnal 3D genome organization remodeling orchestrates rhythmic gene expression in rice [ChIA-PET]	Genome binding/occupancy profiling by high throughput sequencing	Oryza sativa	20	BEDPE SRA Run Selector	Baibai Gao	Dec 24, 2021
GSE155267	MNase-Seq for nucleosome occupancy	Genome binding/occupancy profiling by high throughput sequencing	Oryza sativa	4	BIGWIG WIG XLS SRA Run Selector	Liufan Yin	Oct 15, 2020
GSE181808	Chromatin-remodeling factor OsINO80 regulate H2A.Z incorporation [OsINO80 ChIP-seq]	Genome binding/occupancy profiling by high throughput sequencing	Oryza sativa	8	BIGWIG SRA Run Selector	Liufan Yin	Aug 10, 2024
GSE181809	Chromatin-remodeling factor OsINO80 regulate H2A.Z incorporation [anti-H2A.Z & H3 ChIP-seq]	Genome binding/occupancy profiling by high throughput sequencing	Oryza sativa	12	BIGWIG SRA Run Selector	Liufan Yin	Aug 10, 2024
GSE69426	High-resolution mapping of H4K16 and H3K23 acetylation reveals conserved and unique distribution patterns and functions in Arabidopsis and rice	Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana Oryza sativa	5	BW SRA Run Selector	Xuehua Zhong	Dec 01, 2015