GEO Browser - GEO

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96 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Genome binding/occupancy profiling by high throughput sequencing	Oryza sativa
GSE19602	Global Epigenetic and Transcriptional Trends among Two Rice Subspecies and Their Reciprocal Hybrids.	Non-coding RNA profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Oryza sativa	24	BED TAR SRA Run Selector	guangming he	Jan 20, 2010
GSE19824	Genome-wide evolutionary analysis of eukaryotic DNA methylation	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Apis mellifera Bombyx mori Chlorella variabilis Ciona intestinalis Coprinopsis cinerea Drosophila melanogaster Laccaria bicolor Nematostella vectensis Oryza sativa Phycomyces blakesleeanus Physcomitrium patens Postia placenta Selaginella moellendorffii Tetraodon nigroviridis Tribolium castaneum Uncinocarpus reesii Volvox carteri	33	GFF TXT SRA Run Selector	Toshiro Nishimura	Apr 15, 2010
GSE26610	DNase I hypersensitive sites in two tissues of rice	Genome binding/occupancy profiling by high throughput sequencing	Oryza sativa	2	TXT SRA Run Selector	Yufeng Wu	Nov 09, 2011
GSE26733	ChIP-seq to identify the positions of three histone modifications in the rice genome	Genome binding/occupancy profiling by high throughput sequencing	Oryza sativa	3	SRA Run Selector	Yufeng Wu	Nov 09, 2011
GSE26734	Genome-wide High Resolution Mapping of Active Regulatory DNA Elements in the Rice Genome	Genome binding/occupancy profiling by high throughput sequencing	Oryza sativa	5	TXT	Yufeng Wu	Nov 09, 2011
GSE27048	Genome-wide maps of chromatin state in rice endosperm	Genome binding/occupancy profiling by high throughput sequencing	Oryza sativa	2	BED WIG SRA Run Selector	Feng Tan	Dec 06, 2011
GSE27064	Rice endosperm: mRNA profiling and H3K27me3 occupancy	Expression profiling by array Genome binding/occupancy profiling by high throughput sequencing	Oryza sativa	8	BED CEL CHP WIG	Feng Tan	Dec 06, 2011
GSE37242	Selective chemical labeling reveals the genome-wide distribution of 5-hydroxymethylcytosine in rice	Genome binding/occupancy profiling by high throughput sequencing	Oryza sativa	3	TXT SRA Run Selector	Shuhui Song	Apr 15, 2014
GSE40054	ChIP-seq analysis of SRT1 and H3K9ac in MH63 and srt1 RNAi.	Genome binding/occupancy profiling by high throughput sequencing	Oryza sativa	3	BED TXT WIG XLS SRA Run Selector	zhong xiaochao	Feb 10, 2013
GSE40674	Genome-wide maps of H3K27me3 in WT (wild type) and Epi-df (mutant) rice	Genome binding/occupancy profiling by high throughput sequencing	Oryza sativa	2	WIG SRA Run Selector	Liguo Zhang	Dec 04, 2013
GSE41183	OsJMJ703, a Histone H3K4 Demethylase, Controls Transposon Activity in Rice	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Oryza sativa	4	WIG SRA Run Selector	xiaofeng cao	Jan 01, 2013
GSE42201	Chromatin immunoprecipitation of MADS29 to find the cis regulatory regions and targets of this transcription factor	Genome binding/occupancy profiling by high throughput sequencing	Oryza sativa	3	TXT SRA Run Selector	Sanjay Kapoor	Dec 31, 2013
GSE50755	The CentO satellite confers translational and rotational phasing on cenH3 nucleosomes in rice centromeres	Genome binding/occupancy profiling by high throughput sequencing	Oryza sativa	6	WIG SRA Run Selector	Tao Zhang	Nov 06, 2013
GSE53027	Genome-wide nucleosome positioning is orchestrated by genomic regions associated with DNase I hypersensitivity in rice	Genome binding/occupancy profiling by high throughput sequencing	Oryza sativa	3	GFF TXT SRA Run Selector	Yufeng Wu	May 01, 2014
GSE62550	The Polycomb Group Gene EMF2B modulates protein coding and non-coding RNAs in developing rice panicles.	Genome binding/occupancy profiling by high throughput sequencing	Oryza sativa	6	WIG SRA Run Selector	Venkatesan Sundaresan	May 31, 2018
GSE66537	Global Epigenomic Analysis Indicates that Epialleles Contribute to Allele-specific Expression via Allele-specific Histone Modifications in Hybrid Rice	Genome binding/occupancy profiling by high throughput sequencing	Oryza sativa	10	XLS SRA Run Selector	Zhibin Guo	Sep 30, 2015
GSE69426	High-resolution mapping of H4K16 and H3K23 acetylation reveals conserved and unique distribution patterns and functions in Arabidopsis and rice	Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana Oryza sativa	5	BW SRA Run Selector	Xuehua Zhong	Dec 01, 2015
GSE72186	Genome-wide characterization of cis-acting DNA targets of OsNF-YB1 in rice	Genome binding/occupancy profiling by high throughput sequencing	Oryza sativa	4	BED TXT SRA Run Selector	Jingjng Xu	Dec 16, 2016
GSE72187	Genome-wide study of OsNF-YB1 regulatory network in rice	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Oryza sativa	6		Jingjng Xu	Dec 16, 2016
GSE72694	miR396-OsGRF6 module controls rice inflorescence architecture	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Oryza sativa	4	TXT SRA Run Selector	Wang Kun	May 13, 2016