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228 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana		TXT
GSE14600	Target genes of the MADS transcription factor SEPALLATA3, ChIP-seq	Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana	5	TXT SRA Run Selector	Gerco Angenent	Apr 21, 2009
GSE14636	Target genes of the MADS transcription factor SEPALLATA3	Genome binding/occupancy profiling by array Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana	9	BAR CEL TXT	Gerco Angenent	Apr 21, 2009
GSE16940	An effective approach for identification of in vivo protein–DNA binding sites from paired-end ChIP-Seq data	Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana	1	BED TXT SRA Run Selector	dabing zhang	Jun 04, 2010
GSE21673	Relationship between nucleosome positioning and DNA methylation	Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Genome binding/occupancy profiling by genome tiling array	Arabidopsis thaliana Homo sapiens	6	CEL TXT	matteo Pellegrini	May 29, 2010
GSE21821	Relationship between nucleosome positioning and DNA methylation: Bisulfite-Seq, ChIP-Seq, and Mnase-Seq	Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana Homo sapiens	4	TXT SRA Run Selector	matteo Pellegrini	May 29, 2010
GSE22411	Regulation of heterochromatic DNA replication by histone H3 lysine 27 methyltransferases	Genome binding/occupancy profiling by high throughput sequencing Genome variation profiling by high throughput sequencing	Arabidopsis thaliana	12	TXT SRA Run Selector	Hume Stroud	Jul 21, 2010
GSE24568	A biophysical DNA binding model for the LEAFY transcription factor reveals the evolutionary fluidity of its binding sites	Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana	4	BED TXT SRA Run Selector	Felix Ott	May 13, 2011
GSE25446	Genome-wide comparison of H3K27me3 difference between ref6-1 and wild type Col	Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana	2	TXT WIG SRA Run Selector	Falong Lu	May 25, 2011
GSE25447	Jumonji C domain-containing protein 12 is a Histone H3 Lysine 27 Demethylase	Expression profiling by array Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana	6	CEL TXT WIG	Falong Lu	May 25, 2011
GSE26722	Role of class III HD‐ZIP transcription factors in shade signaling	Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana	4	BED TXT SRA Run Selector	Stephan Wenkel	Jun 01, 2012
GSE33120	Functional characterisation of SVP by a Chromatin Immunoprecipitation sequencing approach	Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana	6	TXT SRA Run Selector	Giulio Pavesi	Apr 23, 2013
GSE34318	Mapping regulatory elements using signatures of open chromatin in Arabidopsis thaliana	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana	14	BAM BED TXT SRA Run Selector	Yufeng Wu	Jul 06, 2012
GSE34840	Genome-wide analysis of histone H3.1 and H3.3 variants in Arabidopsis thaliana	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Arabidopsis thaliana	5	TXT SRA Run Selector	Hume Stroud	Mar 05, 2012
GSE35315	Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responses [ChIP-seq]	Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana	2	TXT WIG SRA Run Selector	Eunkyoo Oh	Jul 08, 2012
GSE35381	RNA polymerase V targets transcriptional silencing components to promoters of protein-coding genes	Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana	6	TXT SRA Run Selector	Qi Zheng	Oct 17, 2012
GSE35952	Global Mapping at the Core of the Arabidopsis Circadian Clock Defines the Network Structure of the Oscillator	Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana	2	BED TXT SRA Run Selector	Jose Luis Riechmann	Mar 08, 2012
GSE36361	Genome-wide maps of PRR5 binding loci in Arabidopsis thaliana	Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana	2	TXT SRA Run Selector	Norihito Nakamichi	Sep 20, 2012
GSE37160	Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responses	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Arabidopsis thaliana	10	TXT WIG	Eunkyoo Oh	Jul 08, 2012
GSE37644	MORC family ATPases required for heterochromatin condensation and gene silencing	Non-coding RNA profiling by high throughput sequencing Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana	26	TXT WIG SRA Run Selector	Shawn J. Cokus	May 03, 2012
GSE38363	Molecular basis for the specification of floral organs by APETALA3 and PISTILLATA	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by array	Arabidopsis thaliana	39	CSV TXT	Samuel Elias Wuest	Jun 01, 2012