GEO Browser - GEO

Series

Samples

Platforms

DataSets

300 series

Export

Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana		BW
GSE176434	Target sites of SWO1 and their expression under salt stress	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Arabidopsis Arabidopsis thaliana	16	BW	Zhidan Wang	Sep 15, 2023
GSE188141	Arabidopsis mutants	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis Arabidopsis thaliana	41	BED BW	li peng	Feb 22, 2023
GSE53322	Mapping and dynamics of regulatory DNA and transcription factor networks in A. thaliana	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana	20	BW TXT SRA Run Selector	John A Stamatoyannopoulos	Dec 15, 2013
GSE53323	Mapping and dynamics of regulatory DNA in A. thaliana accessions	Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana	4	BW TXT SRA Run Selector	John A Stamatoyannopoulos	Dec 15, 2013
GSE53324	Mapping and dynamics of regulatory DNA in A. thaliana tissues and cell types across developmental transitions	Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana	17	BED BW TXT SRA Run Selector	John A Stamatoyannopoulos	Sep 01, 2015
GSE60084	FYRN and FYRC domains of the histone demethylase, JMJ14, mediated chromatin binding and transgene silencing through a pair of NAC transcription factors	Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana	10	BW SRA Run Selector	xiaofeng cao	Aug 28, 2015
GSE65329	REF6 recognizes specific DNA sequence to regulate H3K27me3 demethylation and organ boundary formation	Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana	8	BW SRA Run Selector	xiaofeng cao	Mar 22, 2016
GSE69426	High-resolution mapping of H4K16 and H3K23 acetylation reveals conserved and unique distribution patterns and functions in Arabidopsis and rice	Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana Oryza sativa	5	BW SRA Run Selector	Xuehua Zhong	Dec 01, 2015
GSE74841	H3K36ac is an evolutionary conserved histone modification that marks active genes in plants	Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana	29	BW SRA Run Selector	Minerva Susana Trejo Arellano	Apr 05, 2016
GSE80056	POWERDRESS interacts with HISTONE DEACETYLASE 9 to promote aging in Arabidopsis	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana	14	BW TXT SRA Run Selector	Xuehua Zhong	Nov 11, 2016
GSE81407	Deubiquitinating Enzyme OTU5 Contributes to DNA Methylation Patterns and Is Critical for Phosphate Nutrition Signals	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana	36	BW CGMAP TXT SRA Run Selector	Pao-Yang Chen	Nov 02, 2017
GSE84483	ChIP-seq for Polycomb and associated transcription factors in Arabidopsis	Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana	21	BED BW SRA Run Selector	Roberto Bonasio	Jul 31, 2017
GSE86498	H3K23me1 is an evolutionary conserved histone modification associated with CG DNA methylation in Arabidopsis	Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana	12	BW SRA Run Selector	Minerva Susana Trejo Arellano	Sep 07, 2017
GSE88907	Centromere location in Arabidopsis is unaltered by extreme divergence in CENH3 protein sequence	Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana	11	BW TXT SRA Run Selector	Luca Comai	Oct 19, 2016
GSE92449	Histone lysine-to-methionine mutation reprograms the histone methylation landscape and contributes to pleiotropic development in Arabidopsis	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana	9	BW TXT SRA Run Selector	Derek Pavelec	Jun 16, 2017
GSE93223	Plant-specific histone residue F41 restricts H3.1 distribution in heterochromatin	Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana	11	BW SRA Run Selector	Xuehua Zhong	Feb 18, 2018
GSE94146	Tissue-Specific Transcriptomics Reveals Role of the Unfolded Protein Response in Maintaining Fertility upon Heat Stress in Arabidopsis - ChIP-Seq	Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana	7	BW SRA Run Selector	Hongxing Yang	Mar 15, 2017
GSE95557	Compartmentalization of DNA damage response between heterochromatin and euchromatin is mediated by distinct H2A histone variants	Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana	3	BED BW SRA Run Selector	Zdravko Lorkovic	Mar 02, 2017
GSE95562	ChIP-seq for Polycomb repressive complex 2 in wild type and mutants in Arabidopsis	Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana	9	BED BW SRA Run Selector	Roberto Bonasio	Jul 31, 2017
GSE96994	DDM1/Lsh remodelers allow methylation of DNA wrapped in nucleosomes	Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Third-party reanalysis	Arabidopsis thaliana	15	BED BW GFF TXT SRA Run Selector	David B. Lyons	Nov 15, 2017