GEO Browser - GEO

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157 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana		BED
GSE72735	Genome-wide profiling of SWI/SNF chromatin remodeler BRAHMA and Histone H3 lysine demethyalse Relative of Early Flowering 6 (REF6) in Arabidopsis [ChIP-Seq]	Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis Arabidopsis thaliana	27	BED SRA Run Selector	Lei Gao	Mar 28, 2016
GSE161515	BRD1, BRD2 and BRD13 are core subunits of Arabidopsis SWI/SNF complexes [ChIP-seq]	Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis Arabidopsis thaliana	30	BED SRA Run Selector	yaoguang yu	Mar 22, 2021
GSE161595	BRD1/2/13 are new core subunits of Arabidopsis SWI/SNF complexes	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis Arabidopsis thaliana	42	BED	yaoguang yu	Mar 22, 2021
GSE188141	Arabidopsis mutants	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis Arabidopsis thaliana	41	BED BW	li peng	Feb 22, 2023
GSE233416	Genome-wide profiling of BRAHMA (BRM), BZR1, H3K4me3, H3K27me3, and H4K5ac with indicated growth conditions	Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis Arabidopsis thaliana	28	BED BIGWIG	Tao Zhu	Jan 19, 2024
GSE75071	On the Origin and Evolutionary Consequences of Gene Body DNA Methylation	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Third-party reanalysis	Arabidopsis lyrata Arabidopsis thaliana Brassica oleracea Brassica rapa Capsella rubella Eutrema salsugineum	44	BED TSV SRA Run Selector	Robert J Schmitz	Jul 11, 2016
GSE16940	An effective approach for identification of in vivo protein–DNA binding sites from paired-end ChIP-Seq data	Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana	1	BED TXT SRA Run Selector	dabing zhang	Jun 04, 2010
GSE21301	Orchestration of development by the bifunctional transcription factor, APETALA2	Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana	4	BED GFF SRA Run Selector	Felix Ott	Apr 13, 2010
GSE22276	Genome-wide maps of histone modifications in Arabidopsis thaliana	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by array	Arabidopsis thaliana	20	BED GPR SRA Run Selector	Misook Ha	Feb 02, 2011
GSE24568	A biophysical DNA binding model for the LEAFY transcription factor reveals the evolutionary fluidity of its binding sites	Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana	4	BED TXT SRA Run Selector	Felix Ott	May 13, 2011
GSE26722	Role of class III HD‐ZIP transcription factors in shade signaling	Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana	4	BED TXT SRA Run Selector	Stephan Wenkel	Jun 01, 2012
GSE28398	Histone modifications of Arabidopsis thaliana (aerial tissue)	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Arabidopsis thaliana	12	BED SRA Run Selector	Chongyuan Luo	Jun 06, 2011
GSE30711	ChIP-Seq data from Arabidopsis thaliana under dark and far-red light	Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana	2	BED SRA Run Selector	Bosheng Li	Aug 02, 2011
GSE30713	Genome-wide Binding Site Analysis of FAR-RED ELONGATED HYPOCOTYL 3 Reveals Its Novel Function in Arabidopsis Development	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by array	Arabidopsis thaliana	18	BED CEL	Bosheng Li	Dec 31, 2011
GSE34318	Mapping regulatory elements using signatures of open chromatin in Arabidopsis thaliana	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana	14	BAM BED TXT SRA Run Selector	Yufeng Wu	Jul 06, 2012
GSE35059	ChIP-Seq analysis of Phytochrome Interacting Factor 5 DNA binding in low R/FR condition	Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana	2	BAM BED SRA Run Selector	Markus Volker Kohnen	May 03, 2012
GSE35062	Phytochrome Interacting Factors 4 and 5	Expression profiling by array Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana	26	BAM BED CEL	Markus Volker Kohnen	May 03, 2012
GSE35952	Global Mapping at the Core of the Arabidopsis Circadian Clock Defines the Network Structure of the Oscillator	Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana	2	BED TXT SRA Run Selector	Jose Luis Riechmann	Mar 08, 2012
GSE45213	Genome-wide analysis of SPL7 regulated genes in Arabidopsis	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana	6	BED TXT SRA Run Selector	xin zhao	Apr 15, 2014
GSE47202	Genome-wide profiling of trimethylated histone H3 lysine 27 (H3K27me3) in brm mutant seedlings and in wt seedlings	Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana	6	BED SRA Run Selector	Lei Gao	Mar 01, 2014