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157 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana		BED
GSE136843	Central clock components modulate plant shade avoidance by directly repressing transcriptional activation activity of PHYTOCHROME-INTERACTING FACTORS	Third-party reanalysis Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana		BED TXT WIG	Yu Zhang	Sep 01, 2020
GSE16940	An effective approach for identification of in vivo protein–DNA binding sites from paired-end ChIP-Seq data	Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana	1	BED TXT SRA Run Selector	dabing zhang	Jun 04, 2010
GSE123260	Arabidopsis SWR1-associated protein methyl-CpG-binding domain 9 is required for histone H2A.Z deposition. [ChIPSeq_H3Ac]	Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana	1	BED WIG SRA Run Selector	magdalena ewelina potok	Jun 21, 2019
GSE30711	ChIP-Seq data from Arabidopsis thaliana under dark and far-red light	Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana	2	BED SRA Run Selector	Bosheng Li	Aug 02, 2011
GSE35059	ChIP-Seq analysis of Phytochrome Interacting Factor 5 DNA binding in low R/FR condition	Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana	2	BAM BED SRA Run Selector	Markus Volker Kohnen	May 03, 2012
GSE35952	Global Mapping at the Core of the Arabidopsis Circadian Clock Defines the Network Structure of the Oscillator	Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana	2	BED TXT SRA Run Selector	Jose Luis Riechmann	Mar 08, 2012
GSE48793	APC/CCCS52A2 repressed phytosulfokine signaling restricts root QC cell proliferation through ERF115 degradation	Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana	2	BED TXT SRA Run Selector	Ken Heyndrickx	Nov 04, 2013
GSE51120	A basic helix-loop-helix transcription factors network mediates the brassinosteroid signal [ChIP-seq]	Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana	2	BED WIG SRA Run Selector	Kengo Morohashi	Mar 05, 2014
GSE52175	Genomewide identification of LHY binding targets.	Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana	2	BED SRA Run Selector	Nigel Paul Dyer	Mar 01, 2014
GSE58034	The SET-domain protein SUVR5 mediates H3K9me2 deposition and silencing at stimulus response genes in a DNA methylation independent manner [SELEX]	Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana	2	BED SRA Run Selector	Hume Stroud	Jun 06, 2014
GSE67903	Genome-wide identification of CCA1-bound genes in Arabidopsis by ChIP-Seq	Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana	2	BED SRA Run Selector	Norihito Nakamichi	Mar 11, 2016
GSE99639	Mnase-Seq study of Arabidopsis thaliana mutant chr5	Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana	2	BED SRA Run Selector	Jian Hua	May 23, 2019
GSE123261	Arabidopsis SWR1-associated protein methyl-CpG-binding domain 9 is required for histone H2A.Z deposition. [ChIPSeq_MBD9]	Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana	2	BED WIG SRA Run Selector	magdalena ewelina potok	Jun 21, 2019
GSE142495	Genome-wide MNase hypersensitivity assay unveils distinct classes of open chromatin associated with H3K27me3 and DNA methylation in Arabidopsis thaliana	Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana	2	BED BW SRA Run Selector	Jiming Jiang	Dec 22, 2019
GSE160013	DNA affinity purification sequencing (DAP-seq) data of LEAFY (LFY)	Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana	2	BED BEDGRAPH SRA Run Selector	Jérémy LUCAS	Mar 25, 2021
GSE240737	Integration of shoot-derived polypeptide signals by root TGA transcription factors is essential for survival under fluctuating nitrogen environments [ChIP-seq]	Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana	2	BED	Yuri Ohkubo	Jul 11, 2024
GSE80566	ChIP-seq of abscisic acid-reponsive transcription factors [DIG]	Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana	3	BED SRA Run Selector	Joseph R Ecker	Feb 03, 2017
GSE95557	Compartmentalization of DNA damage response between heterochromatin and euchromatin is mediated by distinct H2A histone variants	Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana	3	BED BW SRA Run Selector	Zdravko Lorkovic	Mar 02, 2017
GSE112889	ZINC-FINGER interactions mediate transcriptional regulation of hypocotyl growth in Arabidopsis	Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana	3	BED BEDGRAPH SRA Run Selector	Eirini Kaiserli	May 17, 2018
GSE118025	Genome-wide maps of LDL1pro::LDL1:GFP in 14 days old arabidopsis	Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana	3	BED SRA Run Selector	Fu-Yu Hung	Aug 19, 2018