GEO Browser - GEO

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708 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana
GSE72735	Genome-wide profiling of SWI/SNF chromatin remodeler BRAHMA and Histone H3 lysine demethyalse Relative of Early Flowering 6 (REF6) in Arabidopsis [ChIP-Seq]	Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis Arabidopsis thaliana	27	BED SRA Run Selector	Lei Gao	Mar 28, 2016
GSE161515	BRD1, BRD2 and BRD13 are core subunits of Arabidopsis SWI/SNF complexes [ChIP-seq]	Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis Arabidopsis thaliana	30	BED SRA Run Selector	yaoguang yu	Mar 22, 2021
GSE161595	BRD1/2/13 are new core subunits of Arabidopsis SWI/SNF complexes	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis Arabidopsis thaliana	42	BED	yaoguang yu	Mar 22, 2021
GSE176434	Target sites of SWO1 and their expression under salt stress	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Arabidopsis Arabidopsis thaliana	16	BW	Zhidan Wang	Sep 15, 2023
GSE188141	Arabidopsis mutants	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis Arabidopsis thaliana	41	BED BW	li peng	Feb 22, 2023
GSE233416	Genome-wide profiling of BRAHMA (BRM), BZR1, H3K4me3, H3K27me3, and H4K5ac with indicated growth conditions	Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis Arabidopsis thaliana	28	BED BIGWIG	Tao Zhu	Jan 19, 2024
GSE54728	Genome expansion of Arabis alpina linked with retrotransposition and reduced symmetric DNA methylation	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Arabidopsis lyrata Arabidopsis thaliana Arabis alpina	30		François ROUDIER	Feb 03, 2015
GSE63463	Evolutionary dynamics of DNA-binding sites and direct target genes of a floral master regulatory transcription factor [ChIP-Seq]	Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis lyrata Arabidopsis thaliana	3	CSV SRA Run Selector	Jose M. Muino	Oct 11, 2015
GSE63464	Evolutionary dynamics of DNA-binding sites and direct target genes of a floral master regulatory transcription factor	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis lyrata Arabidopsis thaliana	12	CSV	Jose M. Muino	Oct 10, 2015
GSE75071	On the Origin and Evolutionary Consequences of Gene Body DNA Methylation	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Third-party reanalysis	Arabidopsis lyrata Arabidopsis thaliana Brassica oleracea Brassica rapa Capsella rubella Eutrema salsugineum	44	BED TSV SRA Run Selector	Robert J Schmitz	Jul 11, 2016
GSE11657	The association between gene expression and whole genome histone H3K4 mono-, di, and trimethylation: ChIP-seq data	Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana	6	TAR XLS	Jean-Jack M. Riethoven	Dec 07, 2010
GSE11658	The association between gene expression and whole genome histone H3K4 mono-, di, and trimethylation	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by array	Arabidopsis thaliana	12	CEL TAR XLS	Jean-Jack M. Riethoven	Dec 07, 2010
GSE14600	Target genes of the MADS transcription factor SEPALLATA3, ChIP-seq	Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana	5	TXT SRA Run Selector	Gerco Angenent	Apr 21, 2009
GSE14636	Target genes of the MADS transcription factor SEPALLATA3	Genome binding/occupancy profiling by array Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana	9	BAR CEL TXT	Gerco Angenent	Apr 21, 2009
GSE16940	An effective approach for identification of in vivo protein–DNA binding sites from paired-end ChIP-Seq data	Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana	1	BED TXT SRA Run Selector	dabing zhang	Jun 04, 2010
GSE20176	Orchestration of Floral Initiation by APETALA1	Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana	4	SOA SRA Run Selector	Gerco Angenent	Apr 02, 2010
GSE21301	Orchestration of development by the bifunctional transcription factor, APETALA2	Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana	4	BED GFF SRA Run Selector	Felix Ott	Apr 13, 2010
GSE21673	Relationship between nucleosome positioning and DNA methylation	Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Genome binding/occupancy profiling by genome tiling array	Arabidopsis thaliana Homo sapiens	6	CEL TXT	matteo Pellegrini	May 29, 2010
GSE21821	Relationship between nucleosome positioning and DNA methylation: Bisulfite-Seq, ChIP-Seq, and Mnase-Seq	Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana Homo sapiens	4	TXT SRA Run Selector	matteo Pellegrini	May 29, 2010
GSE22276	Genome-wide maps of histone modifications in Arabidopsis thaliana	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by array	Arabidopsis thaliana	20	BED GPR SRA Run Selector	Misook Ha	Feb 02, 2011