The DNA-Encoded Nucleosome Organization of a Eukaryotic Genome

An Alternative Splicing Switch Regulates Embryonic Stem Cell Pluripotency and Reprogramming

Nitric oxide regulates gene expression in cancers by controlling histone posttranslational modifications

Network preservation reveals shared and unique biological processes associated with chronic alcohol abuse in the NAc and PFC

Integrative analyses of human reprogramming reveal dynamic nature of induced pluripotency

Distinct roles for motif affinity, chromatin state, and co-regulatory motifs in PPARγ binding and enhancer activity

Joint profiling of chromatin accessibility, DNA methylation and transcription in single cells

A combination of transcription factors mediates inducible interchromosomal contacts

Systematic Analysis of Transcription Factors Binding to Noncoding Variants

Loss of CHD1 promotes chromatin dysregulation leading to heterogeneous mechanisms of resistance to hormone therapy in prostate cancer

The DNA-binding protein HTa from Thermoplasma acidophilum is an archaeal histone analog

A genome wide screening for effectors of chromatin accessibility

CRISPR and biochemical screens identify MAZ as a co-factor in CTCF-mediated insulation at Hox clusters

Sequence determinants of human gene regulatory elements

Transcription factor paralogs orchestrate alternative gene regulatory networks by context-dependent cooperation with multiple cofactors

A cis-regulatory lexicon of DNA motif combinations mediating cell type-specific gene regulation

Regulation of mouse chamber selective enhancers

Targeting MYC effector functions in pancreatic cancer by inhibiting the ATPase RUVBL1/2

Enhancer grammar of liver cell types and hepatocyte zonation states

Missense mutations in CRX homeodomain cause dominant retinopathies through two distinct mechanisms