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13111 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Genome binding/occupancy profiling by high throughput sequencing	Mus musculus
GSE97367	BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage (Gene expression profiling in several tetrapod species, bulk tissue RNA-seq)	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Xenopus tropicalis Ornithorhynchus anatinus Mus musculus Monodelphis domestica Homo sapiens Gallus gallus Anolis carolinensis	197	BW TXT	Diego Cortez	Oct 27, 2017
GSE87872	Gene resistance to transcriptional reprogramming following nuclear transfer is directly mediated by multiple chromatin repressive pathways	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Xenopus laevis Mus musculus	48	BW TXT SRA Run Selector	Charles Bradshaw	Jun 12, 2017
GSE132117	Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Xenopus laevis Mus musculus	33	TSV	Martina Brueckner	Jun 04, 2019
GSE237049	Cohesin and CTCF do not assemble TADs in Xenopus sperm and male pronuclei	Genome binding/occupancy profiling by high throughput sequencing	Xenopus laevis Mus musculus	9	BED BEDGRAPH	Roman R Stocsits	Oct 25, 2023
GSE237051	Cohesin and CTCF do not assemble TADs in Xenopus sperm and male pronuclei	Genome binding/occupancy profiling by high throughput sequencing Other	Xenopus laevis Mus musculus Homo sapiens	28	BED BEDGRAPH HIC	Roman R Stocsits	Oct 25, 2023
GSE77213	High-throughput functional comparison of promoter and enhancer activities	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	unidentified plasmid Mus musculus	60	TXT XLS XLSX SRA Run Selector	Thomas Andy Nguyen	May 23, 2016
GSE202585	Genome-wide screening identifies Trim33 as an essential regulator of dendritic cell differentiation	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	unidentified plasmid Mus musculus	38	BW	Ioanna Tiniakou	Apr 12, 2024
GSE106578	Nucleosome profiles for mammalian tissues [Mnase-Seq]	Genome binding/occupancy profiling by high throughput sequencing	Tupaia belangeri Sus scrofa Mus musculus Macaca mulatta Homo sapiens	21	BW SRA Run Selector	Yumei Li	Aug 07, 2018
GSE106580	Nucleosome profiles for mammalian tissues	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Tupaia belangeri Sus scrofa Mus musculus Macaca mulatta Homo sapiens	39	BW	Yumei Li	Aug 06, 2018
GSE120589	The mole genome reveals regulatory rearrangements associated with adaptive intersexuality	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Talpa occidentalis Mus musculus	70	BEDGRAPH BW HIC	Francisca Martinez Real	Oct 09, 2020
GSE219021	Co-option of the transcription factor SALL1 in mole ovotestis formation [ChIP-seq]	Genome binding/occupancy profiling by high throughput sequencing	Talpa occidentalis Mus musculus	32	BW	Francisca Martinez Real	Dec 04, 2022
GSE219025	Co-option of the transcription factor SALL1 in mole ovotestis formation	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Talpa occidentalis Mus musculus	37	TXT	Francisca Martinez Real	Nov 29, 2022
GSE65889	Novel nucleosomal particles containing core histones and linker DNA but no histone H1	Genome binding/occupancy profiling by high throughput sequencing	Synthetic plasmid Saccharomyces cerevisiae Mus musculus	31	BW FA TXT SRA Run Selector	David Johannes Clark	Sep 23, 2015
GSE194018	A role for the GATA transcription factor family in X-chromosome inactivation as direct potent Xist activators	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Synthetic plasmid Mus musculus	39	BW NARROWPEAK	Till Schwämmle	Jan 26, 2022
GSE13622	The DNA-Encoded Nucleosome Organization of a Eukaryotic Genome	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by array	synthetic construct Saccharomyces cerevisiae Mus musculus Homo sapiens	8	TAB TXT SRA Run Selector	Desiree Tillo	Dec 18, 2008
GSE60378	Calibrating ChIP-seq with nucleosomal internal standards to measure histone modification density genome-wide	Genome binding/occupancy profiling by high throughput sequencing	synthetic construct Mus musculus Homo sapiens Drosophila melanogaster	27	BIGWIG SRA Run Selector	Alexander Ruthenburg	May 07, 2015
GSE62777	Integrative analyses of human reprogramming reveal dynamic nature of induced pluripotency	Expression profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	synthetic construct Mus musculus Homo sapiens	317	BED TDF TXT	Shannan J Ho Sui	Jul 16, 2015
GSE84888	Distinct roles for motif affinity, chromatin state, and co-regulatory motifs in PPARγ binding and enhancer activity	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	synthetic construct Mus musculus	21	TXT SRA Run Selector	Sharon R Grossman	Feb 03, 2017
GSE109262	Joint profiling of chromatin accessibility, DNA methylation and transcription in single cells	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	synthetic construct Mus musculus	244	TSV TXT SRA Run Selector	Felix Krueger	Jan 17, 2018
GSE144454	A genome wide screening for effectors of chromatin accessibility	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	synthetic construct Mus musculus Homo sapiens	75	BW	Yusuke Miyanari	May 01, 2022