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872 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Genome binding/occupancy profiling by high throughput sequencing	Mus musculus		TSV
GSE35213	T-cell factor 4 and β-catenin chromatin occupancies pattern zonal liver metabolism.	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	13	BED TSV SRA Run Selector	Philippe Veber	Jan 18, 2014
GSE39502	Differences in CTCF binding site sequence are associated with unique regulatory and functional trends during embryonic stem cell differentiation [ChIP-Seq]	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	7	BED PDF TSV WIG SRA Run Selector	Sebastien Vigneau	Oct 11, 2013
GSE39523	Differences in CTCF binding site sequence are associated with unique regulatory and functional trends during embryonic stem cell differentiation	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	9	BED TSV WIG	Sebastien Vigneau	Oct 11, 2013
GSE42132	ChIP-seq analysis of Gli1 and Sox2 input to neural progenitor program and integration with actve histone marks	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	10	BED TSV SRA Run Selector	Kevin Peterson	Dec 15, 2012
GSE42474	Master Transcription Factors and Mediator Establish Super-Enhancers at Key Cell Identity Genes [ChIP-Seq and RNA-seq]	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	9	TSV WIG SRA Run Selector	Richard A Young	Jan 02, 2013
GSE42594	cis-Regulation of Shh-directed neural pattering	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by array	Mus musculus	16	BED CEL TSV	Kevin Peterson	Dec 15, 2012
GSE44288	Master Transcription Factors and Mediator Establish Super-Enhancers at Key Cell Identity Genes	Expression profiling by array Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	23	TSV TXT WIG	Richard A Young	Feb 13, 2013
GSE45282	Integration of genome-wide approaches identifies lncRNAs of adult neural stem cells and their progeny in vivo	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Expression profiling by array Non-coding RNA profiling by array	Mus musculus	32	BED CALLS PAIR TSV	Abhinav Nellore	Apr 11, 2013
GSE47819	Epigenetic and genetic changes during mouse hematopoietic stem cell aging	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	37	BED TSV	deqiang sun	Apr 30, 2014
GSE50793	Role of de novo DNA methyltransferases in hematopoietic stem cells	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	27	BED TSV	deqiang sun	Aug 19, 2014
GSE52397	C/EBPα poises B cells for rapid reprogramming into iPS cells	Expression profiling by array Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	48	BED TSV TXT	Bruno Di Stefano	Nov 17, 2013
GSE52974	The 8q24 cleft lip susceptibility locus is a remote Myc enhancer required for normal face morphology	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	11	BED BW TSV TXT SRA Run Selector	Massimo Petretich	Apr 03, 2014
GSE54046	Insm1 cooperates with Neurod1 and Foxa2 to maintain mature pancreatic β-cell function (Insm1, Neurod1 and Foxa2 ChipSeq data from pancreatic beta cell)	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	4	TSV SRA Run Selector	Andranik Ivanov	Mar 31, 2015
GSE57409	Epigenomic comparison of distinct pluripotent stem cell states reveals a new class of enhancers with roles throughout mammalian development	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	14	BED BIGWIG TSV TXT	Paul J. Tesar	Jun 04, 2014
GSE60605	An alternative pluripotent state confers interspecies chimaeric competency	Expression profiling by array Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens Macaca mulatta Mus musculus Pan troglodytes	42	BIGWIG CEL TSV	Christopher Benner	May 06, 2015
GSE60955	The metabolome regulates the epigenetic landscape during naïve to primed human embryonic stem cell transition	Expression profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	18	TSV TXT WIG SRA Run Selector	Hannele Ruohola-Baker	Nov 17, 2015
GSE63277	Long Non-coding RNAs Control Hematopoietic Stem Cell (HSC) Function	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	19	BW TSV TXT	deqiang sun	Jan 06, 2015
GSE63782	Transcriptional plasticity promotes primary and acquired resistance to BET bromodomain inhibition	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	103	BED BW GTF TSV SRA Run Selector	Philipp Rathert	Sep 08, 2015
GSE66736	Tex10 Coordinates Epigenetic Control of Super-Enhancer Activity for Pluripotency and Reprogramming	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	7	BED BEDGRAPH TSV	Jianlong Wang	May 06, 2015
GSE67384	Chromatin signature identifies monoallelic gene expression across mammalian cell types	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	7	CSV TSV WIG	Sebastien Vigneau	Jun 17, 2015