GEO Browser - GEO

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64 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Genome binding/occupancy profiling by high throughput sequencing	Mus musculus		RDS
GSE249687	Three-dimensional chromatin architecture in DRG neurons following sciatic nerve injury in WT and Rad21 KO mice.	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	52	BED BW HIC RDS TXT	Ilaria Palmisano	Aug 29, 2024
GSE244709	Fate restriction governs regional astrocyte allocation during brain development	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	20	BROADPEAK CSV NARROWPEAK RDS TXT	Yunli Xie	Aug 14, 2024
GSE253954	Conserved dorsal horn neuron subtype-specific enhancers are implicated in the genetic risk of chronic pain.	Other Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Macaca mulatta Mus musculus	17	RDS TAR	Michael Leone	Aug 01, 2024
GSE242466	Single cell chromatin accessibility allows analysis of the transposable element landscape, revealing shared features of immune tissue residency	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	31	BED CSV RDS TSV TXT	LIT NGS-Core	Jul 22, 2024
GSE240583	Baf155 establishes chromatin priming to promote hematopoietic regeneration and function [single cell multiome - ATAC + GEX]	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	12	ARROW MTX RDS TSV	Changxu Fan	Jul 09, 2024
GSE237637	The transcriptional landscape associated with the deletion of Regnase-1 [ATAC-Seq]	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	12	BW NARROWPEAK RDS	Xin Sun	May 30, 2024
GSE247130	CEBPA restricts alveolar type 2 cell plasticity during development and injury-repair [1]	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	12	BROADPEAK CLOUPE H5 RDS TBI TSV	Dalia Hassan	Apr 18, 2024
GSE264098	CEBPA restricts alveolar type 2 cell plasticity during development and injury-repair [scATAC-seq]	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	4	BROADPEAK BW RDS	Dalia Hassan	Apr 16, 2024
GSE249785	Childhood cancer mutagenesis caused by a domesticated DNA transposase	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	12	RDS	Claudia L Kleinman	Mar 27, 2024
GSE260504	ATAC-seq of TNF-alpha activation in HEK cells with or without TRAFTAC against NfkB	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	4	BW NARROWPEAK RDS	Pierre-Luc Germain	Mar 04, 2024
GSE231779	Spatial enhancer activation influences inhibitory neuron identity during mouse embryonic development	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	38	BW CSV NARROWPEAK RDS	Christian Mayer	Feb 19, 2024
GSE237987	ARID1A Orchestrates SWI/SNF-mediated Sequential Binding of Transcription Factors and Its Deficiency Drives Pre-memory B-cell Fate and Lymphomagenesis [Arid1a_multiome]	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	14	RDS TBI TSV	Christopher Russell Chin	Feb 02, 2024
GSE230579	Single-mitosis dissection of acute and chronic DNA mutagenesis and repair	Other Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus Mus musculus castaneus	32	RDS	Paul Adrian Ginno	Jan 26, 2024
GSE247391	Fate-mapping via Spp1-expression history revealed innate immune memory of microglia imprinted by neonatal injury [Spp1Tdt]	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	60	BW CSV RDS ZIP	DANYANG HE	Jan 24, 2024
GSE153331	Astrocyte Reactivity and Cognitive Decline Follow Chronic Heterochromatin Loss in Neurons	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	71	BEDGRAPH BW COV CSV RDS TXT SRA Run Selector	Andrew Newman	Jan 10, 2024
GSE225503	scRNAseq and scATACseq of Cd45+ cells from brains of 5XFAD mice bearing distinct APOE alleles and across age	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	8	H5 RDS TBI TSV	Alon Millet	Dec 29, 2023
GSE239999	An Exhausted-Like Microglial Population Accumulates in Aged and APOE4 Genotype Alzheimer’s Brains	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	27	H5 RDS SF TBI TSV	Alon Millet	Dec 29, 2023
GSE250589	Distinct transcriptomic and epigenomic responses of mature oligodendrocytes during disease progression in a mouse model of multiple sclerosis	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	38	BEDPE BW H5 RDS TBI TSV	Bastien Hervé	Dec 20, 2023
GSE219015	Deciphering cell states and genealogies of human hematopoiesis with single-cell multi-omics	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens Mus musculus	56	H5 RDS TAR TSV TXT	Chen Weng	Nov 18, 2023
GSE246167	Epigenomic Profile of Lineage-Traced Mouse Horizontal Basal Cells Before and 24 Hours After Injury	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	6	MTX RDS TSV	Whitney E Heavner	Oct 30, 2023