GEO Browser - GEO

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31 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Genome binding/occupancy profiling by high throughput sequencing	Mus musculus		PAIR
GSE27215	IGH analysis in pro-B cells with H3K4me3, H3K4me2, H3K9ac, H3K27me3, Pax5 and CTCF	Genome binding/occupancy profiling by genome tiling array Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	16	BED PAIR	Meinrad Busslinger	Feb 11, 2011
GSE26833	Dual functions of Tet1 in transcriptional regulation in mouse embryonic stem cells	Expression profiling by array Genome binding/occupancy profiling by genome tiling array Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by genome tiling array	Mus musculus	38	CEL PAIR TXT	Hao Wu	Mar 30, 2011
GSE29395	Lsh, chromatin remodeling family member, modulates genome-wide cytosine methylation patterns at nonrepeat sequences	Expression profiling by array Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by genome tiling array	Mus musculus	80	CEL GFF PAIR TXT	Jigui Shan	May 20, 2011
GSE27866	Genomic prevalence of heterochromatic H3K9me2 and transcription do not discriminate pluripotent from terminally differentiated cells	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Genome binding/occupancy profiling by genome tiling array	Mus musculus	19	PAIR WIG	Dirk Schuebeler	Jun 21, 2011
GSE29183	Genome-scale analysis of metazoan replication origins reveals their organization in specific but flexible sites defined by conserved features.	Genome binding/occupancy profiling by high throughput sequencing	Drosophila melanogaster Mus musculus	5	PAIR	Christelle Cayrou	Jul 28, 2011
GSE33518	Identification and characterization of Hoxa9 binding sites in hematopoietic cells	Expression profiling by array Genome binding/occupancy profiling by genome tiling array Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	29	CEL PAIR WIG	Yongsheng Huang	Dec 05, 2011
GSE30206	DNA binding factors shape the mouse methylome at distal regulatory regions.	Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Genome binding/occupancy profiling by array Expression profiling by high throughput sequencing	Mus musculus	23	PAIR WIG	Dirk Schuebeler	Dec 09, 2011
GSE36464	Study on the genomic changes in ColIa2 Cre x RBP-Jkappa loxp/loxp mice	Genome variation profiling by genome tiling array Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	9	GFF PAIR TXT XLS	Bing Hu	May 01, 2012
GSE27436	Dynamic hydroxymethylation of DNA marks differentiation-driven enhancers	Expression profiling by array Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	19	PAIR SAM WIG	Aurelien Serandour	Jun 04, 2012
GSE40540	IP of 5-hydroxymethylcytosine (5-hmC) and 5-methylcytosine (5-mC) enriched DNA fragments from control and PB treated mouse livers	Methylation profiling by genome tiling array Expression profiling by array Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	153	BEDGRAPH CEL PAIR	John Paterson Thomson	Sep 12, 2012
GSE42478	Defining a molecular roadmap of cellular reprogramming into iPS cells	Expression profiling by array Non-coding RNA profiling by array Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by genome tiling array	Betapolyomavirus hominis Betapolyomavirus macacae Homo sapiens Human alphaherpesvirus 1 Human alphaherpesvirus 2 Human betaherpesvirus 5 Human gammaherpesvirus 8 Human immunodeficiency virus 1 JC polyomavirus Merkel cell polyomavirus Murid betaherpesvirus 1 Murid gammaherpesvirus 4 Mus musculus Rattus norvegicus human gammaherpesvirus 4	61	BIGWIG CEL PAIR TXT	Ben S. Wittner	Dec 20, 2012
GSE44278	Redistribution of H3K27me3 upon DNA hypomethylation results in de-repression of polycomb-target genes	Expression profiling by array Genome binding/occupancy profiling by genome tiling array Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	35	BEDGRAPH PAIR	James P Reddington	Feb 12, 2013
GSE45282	Integration of genome-wide approaches identifies lncRNAs of adult neural stem cells and their progeny in vivo	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Expression profiling by array Non-coding RNA profiling by array	Mus musculus	32	BED CALLS PAIR TSV	Abhinav Nellore	Apr 11, 2013
GSE49847	A comparative encyclopedia of DNA elements in the mouse genome	Expression profiling by high throughput sequencing Genome variation profiling by genome tiling array Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	588	BAM BEDRNAELEMENTS BIGWIG BROADPEAK NARROWPEAK PAIR	ENCODE DCC	Aug 14, 2013
GSE43103	H4K16 acetylation marks active genes and enhancers of embryonic stem cells, but does not alter chromatin compaction	Genome binding/occupancy profiling by high throughput sequencing Genome binding/occupancy profiling by genome tiling array Expression profiling by array	Mus musculus	33	BEDGRAPH PAIR TXT WIG	Gillian Taylor	Aug 23, 2013
GSE46070	Gene regulation and priming by Topoisomerase IIα in embryonic stem cells	Genome binding/occupancy profiling by genome tiling array Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	7	PAIR	Sudhir Thakurela	Oct 10, 2013
GSE55426	Domains of genomewide gene expression dysregulation in Down syndrome	Methylation profiling by genome tiling array Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens Mus musculus	42	BW PAIR TXT	Audrey Letourneau	Apr 08, 2014
GSE52349	The nucleosomal barrier to promoter escape by RNA Polymerase II is overcome by the chromatin remodeler Chd1	Genome binding/occupancy profiling by genome tiling array Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	14	BED BEDGRAPH GFF PAIR WIG	Jorja Henikoff	Apr 15, 2014
GSE41955	The RUNX2 Cistrome in Osteoblasts: Characterization, Downregulation Following Differentiation and Relationship to Gene Expression	Expression profiling by array Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	22	BED BEDGRAPH CALLS PAIR	Mark B Meyer	Apr 24, 2014
GSE50585	Trophoblast giant cell underrepresentation	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Expression profiling by genome tiling array Genome variation profiling by genome tiling array	Mus musculus	41	PAIR TXT	Roberta L Hannibal	May 29, 2014