GEO Browser - GEO

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1091 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Genome binding/occupancy profiling by high throughput sequencing	Mus musculus		NARROWPEAK
GSE194018	A role for the GATA transcription factor family in X-chromosome inactivation as direct potent Xist activators	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Synthetic plasmid Mus musculus	39	BW NARROWPEAK	Till Schwämmle	Jan 26, 2022
GSE157139	CRISPR and biochemical screens identify MAZ as a co-factor in CTCF-mediated insulation at Hox clusters	Expression profiling by high throughput sequencing Other Genome binding/occupancy profiling by high throughput sequencing	synthetic construct Mus musculus	138	BEDGRAPH BW HIC NARROWPEAK TXT	Danny Reinberg	Feb 06, 2022
GSE167358	Distal and proximal cis-regulatory elements sense X-dosage and developmental state at the Xist locus	Genome binding/occupancy profiling by high throughput sequencing	synthetic construct Mus musculus	164	BW HIC NARROWPEAK	Till Schwämmle	Mar 04, 2021
GSE213876	Sequencing of N6-methyl-deoxyadenosine at single-base resolution across the mammalian genome	Other Genome binding/occupancy profiling by high throughput sequencing	synthetic construct Mus musculus Escherichia coli K-12 Escherichia coli	67	NARROWPEAK TXT	Xiaolong Cui	Dec 28, 2023
GSE223659	Missense mutations in CRX homeodomain cause dominant retinopathies through two distinct mechanisms	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	synthetic construct Mus musculus	68	BIGWIG NARROWPEAK	Shiming Chen	Nov 08, 2023
GSE129380	An evolutionarily conserved function of polycomb silences the MHC class I antigen presentation pathway and enables immune evasion in cancer [ChIP-Seq]	Genome binding/occupancy profiling by high throughput sequencing	Sarcophilus harrisii Mus musculus Homo sapiens	24	BROADPEAK NARROWPEAK SRA Run Selector	Mark Dawson	Sep 28, 2019
GSE129382	An evolutionarily conserved function of polycomb silences the MHC class I antigen presentation pathway and enables immune evasion in cancer	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Sarcophilus harrisii Mus musculus Homo sapiens	54	BROADPEAK NARROWPEAK	Mark Dawson	Sep 28, 2019
GSE222040	Synthetic reversed sequence reveals default chromatin states	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Saccharomyces cerevisiae Mus musculus	112	BW NARROWPEAK	Brendan R. Camellato	Dec 30, 2023
GSE252482	Synthetic reversed sequences reveal default genomic states	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Saccharomyces cerevisiae Mus musculus	160	BW NARROWPEAK	Brendan R. Camellato	Jan 16, 2024
GSE159815	The Regulatory Evolution of the Primate Fine-Motor System	Genome binding/occupancy profiling by high throughput sequencing	Rattus norvegicus Mus musculus Macaca mulatta	33	BIGWIG NARROWPEAK SRA Run Selector	Morgan Wirthlin	Mar 07, 2022
GSE233593	Dor regulates alpha-KG metabolic pathways in mature oligodendrocytes to enhance myelination and reverse age-related remyelination decline	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Rattus norvegicus Mus musculus	9	BIGWIG NARROWPEAK RESULTS	XueLian He	Jul 04, 2024
GSE241561	SRF transcriptionally regulates the oligodendrocyte cytoskeleton during CNS myelination	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Rattus norvegicus Mus musculus	33	BIGWIG MTX NARROWPEAK RESULTS TSV	Fabian Michael Kern	Feb 23, 2024
GSE67978	Epigenomic annotation of gene regulatory alterations during evolution of the primate brain	Genome binding/occupancy profiling by high throughput sequencing	Pan troglodytes Mus musculus Macaca mulatta Homo sapiens	98	BEDGRAPH BW NARROWPEAK TXT SRA Run Selector	Menno P Creyghton	Jan 13, 2016
GSE32218	Histone Modifications by ChIP-seq from ENCODE/Stanford/Yale	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	22	BIGWIG NARROWPEAK SRA Run Selector	ENCODE DCC	Sep 20, 2011
GSE36023	Histone Modifications by ChIP-seq from ENCODE/Caltech	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	17	BIGWIG NARROWPEAK TXT SRA Run Selector	ENCODE DCC	Apr 19, 2012
GSE36024	Transcription Factor Binding Sites by ChIP-seq from ENCODE/Caltech	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	30	BIGWIG NARROWPEAK TXT SRA Run Selector	ENCODE DCC	Apr 13, 2012
GSE36030	Transcription Factor Binding Sites by ChIP-seq from ENCODE/Stanford/Yale	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	85	BIGWIG NARROWPEAK TXT SRA Run Selector	ENCODE DCC	Apr 11, 2012
GSE37074	DNaseI Hypersensitivity by Digital DNaseI from ENCODE/University of Washington	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	53	BIGWIG BROADPEAK NARROWPEAK SRA Run Selector	ENCODE DCC	Oct 03, 2012
GSE40848	DNaseI Hypersensitivity by Digital DNaseI from ENCODE/PSU	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	2	BIGWIG NARROWPEAK SRA Run Selector	ENCODE DCC	Sep 13, 2012
GSE40869	DNaseI Digital Genomic Footprinting from ENCODE/University of Washington [Mouse]	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	22	BIGWIG BROADPEAK NARROWPEAK SRA Run Selector	ENCODE DCC	Sep 19, 2012