GEO Browser - GEO

Series

Samples

Platforms

DataSets

1072 series

Export

Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Genome binding/occupancy profiling by high throughput sequencing	Mus musculus		NARROWPEAK
GSE80663	Identification of TWIST1 transcriptional targets in the cranial mesoderm	Expression profiling by array Genome binding/occupancy profiling by high throughput sequencing	Canis lupus familiaris Mus musculus	39	NARROWPEAK	PIERRE OSTEIL	Aug 23, 2016
GSE222972	Epigenomic analysis of regulatory evolution in mole rats	Genome binding/occupancy profiling by high throughput sequencing Other	Cavia porcellus Fukomys damarensis Heterocephalus glaber Mus musculus	160	NARROWPEAK WIG	Diego Villar	Aug 21, 2023
GSE135406	Comparative transcriptomic and epigenomic analysis identifies key regulators of injury response and neurogenic competence in retinal glia	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Danio rerio Mus musculus	145	NARROWPEAK XLSX SRA Run Selector	Jie Wang	May 01, 2020
GSE184036	Single-cell profiling of histone modifications and transcription in developmental systems with EpiDamID	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Danio rerio Homo sapiens Mus musculus	155	BEDGRAPH BROADPEAK HDF5 NARROWPEAK TSV	Jop Kind	Apr 01, 2022
GSE212252	Balanced SET levels favor the correct enhancer repertoire during cell fate acquisition	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Danio rerio Homo sapiens Mus musculus	80	BROADPEAK HIC NARROWPEAK TAB	Luca Massimino	Sep 12, 2022
GSE233198	Differential programs of melanocyte cell states	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Danio rerio Homo sapiens Mus musculus	20	BED BW MTX NARROWPEAK TBI TSV	Vivek T Natarajan	Jul 05, 2024
GSE250263	EVOLUTIONARY CO-OPTION OF AN ANCESTRAL CLOACAL REGULATORY LANDSCAPE WITH THE EMERGENCE OF DIGITS AND GENITALS [ATAC-seq]	Genome binding/occupancy profiling by high throughput sequencing	Danio rerio Mus musculus	14	BW NARROWPEAK	Aurelie Hintermann	Apr 17, 2024
GSE250267	EVOLUTIONARY CO-OPTION OF AN ANCESTRAL CLOACAL REGULATORY LANDSCAPE WITH THE EMERGENCE OF DIGITS AND GENITALS	Genome binding/occupancy profiling by high throughput sequencing Other Expression profiling by high throughput sequencing	Danio rerio Mus musculus	34	BED BW COOL NARROWPEAK TXT	Aurelie Hintermann	Apr 17, 2024
GSE250367	EVOLUTIONARY CO-OPTION OF AN ANCESTRAL CLOACAL REGULATORY LANDSCAPE WITH THE EMERGENCE OF DIGITS AND GENITALS [ChIP-seq]	Genome binding/occupancy profiling by high throughput sequencing Third-party reanalysis	Danio rerio Mus musculus	3	BW NARROWPEAK TXT	Aurelie Hintermann	Apr 17, 2024
GSE110061	Direct DNA crosslinking with CAP-C uncovers transcription-dependent chromatin organization at high resolution	Genome binding/occupancy profiling by high throughput sequencing Other	Drosophila melanogaster Homo sapiens Mus musculus	76	BIGWIG HIC NARROWPEAK TXT SRA Run Selector	Youzhi Cheng	Aug 22, 2020
GSE111000	Ultra-parallel ChIP-seq by barcoding of intact nuclei	Genome binding/occupancy profiling by high throughput sequencing	Drosophila melanogaster Homo sapiens Mus musculus	44	BED BW GFF NARROWPEAK SRA Run Selector	Thomas Manke	Mar 06, 2018
GSE213876	Sequencing of N6-methyl-deoxyadenosine at single-base resolution across the mammalian genome	Other Genome binding/occupancy profiling by high throughput sequencing	Escherichia coli Escherichia coli K-12 Mus musculus synthetic construct	67	NARROWPEAK TXT	Xiaolong Cui	Dec 28, 2023
GSE133379	Detection of genomic G-quadruplexes in living cells using a small artificial protein	Genome binding/occupancy profiling by high throughput sequencing	Gallus gallus Homo sapiens Mus musculus	18	BIGBED BIGWIG NARROWPEAK SRA Run Selector	Zheng Tan	Oct 13, 2020
GSE160653	The chromatin and regulatory properties of pluripotency-associated poised enhancers are conserved in vivo [ATAC-seq]	Genome binding/occupancy profiling by high throughput sequencing	Gallus gallus Mus musculus	3	BEDGRAPH NARROWPEAK SRA Run Selector	Giuliano Crispatzu	Dec 31, 2020
GSE160654	The chromatin and regulatory properties of pluripotency-associated poised enhancers are conserved in vivo [ChIP-seq]	Genome binding/occupancy profiling by high throughput sequencing	Gallus gallus Mus musculus	12	BEDGRAPH BROADPEAK NARROWPEAK SRA Run Selector	Giuliano Crispatzu	Dec 31, 2020
GSE160657	The chromatin and regulatory properties of pluripotency-associated poised enhancers are conserved in vivo	Genome binding/occupancy profiling by high throughput sequencing	Gallus gallus Mus musculus	28	BED BEDGRAPH BROADPEAK NARROWPEAK TXT	Giuliano Crispatzu	Dec 31, 2020
GSE194418	Developmental and evolutionary comparative analysis of a HoxD regulatory landscape in mammals and birds [ChIP-seq]	Genome binding/occupancy profiling by high throughput sequencing	Gallus gallus Mus musculus	15	BED BIGWIG NARROWPEAK	Aurelie Hintermann	Jun 20, 2022
GSE195592	Developmental and evolutionary comparative analysis of a HoxD regulatory landscape in mammals and birds	Genome binding/occupancy profiling by high throughput sequencing Other	Gallus gallus Mus musculus	46	BED BEDGRAPH BIGWIG BW COOL NARROWPEAK TXT	Aurelie Hintermann	Jun 20, 2022
GSE203031	Developmental and evolutionary comparative analysis of a HoxD regulatory landscape in mammals and birds [ATAC-Seq]	Genome binding/occupancy profiling by high throughput sequencing	Gallus gallus Mus musculus	12	BED BEDGRAPH BIGWIG NARROWPEAK	Aurelie Hintermann	Jun 20, 2022
GSE231492	Dimeric G-quadruplex motifs-induced NFRs determine strong replication origins in vertebrates	Third-party reanalysis Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Gallus gallus Homo sapiens Mus musculus	14	BED BIGWIG NARROWPEAK	Caroline Tonnerre-Doncarli	Jul 19, 2023