GEO Browser - GEO

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148 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Genome binding/occupancy profiling by high throughput sequencing	Mus musculus		HIC
GSE169561	In vivo dissection of a clustered-CTCF domain boundary reveals developmental principles of regulatory insulation	Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	42	BW HIC	Rafael Domínguez Acemel	May 05, 2022
GSE130224	The Fundamental Role of Chromatin Loop Extrusion in Physiological V(D)J Recombination	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other Genome variation profiling by high throughput sequencing	Mus musculus	133	BED BEDGRAPH BEDPE BW HIC TXT	Frederick W Alt	Aug 19, 2019
GSE193968	Enhancer-instructed chromatin folding and compartmentalization dictate Vκ repertoire rearrangement to combat bacterial infection	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	32	BIGWIG HIC	Edgar Mauricio Barajas-Mora	Dec 05, 2022
GSE171749	SETDB1/NSD dependent H3K9me3/H3K36me3 dual heterochromatin maintains gene expression profiles by bookmarking poised enhancers	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Other	Mus musculus	88	BED BROADPEAK BW HIC TXT SRA Run Selector	Amandine BARRAL	Jan 25, 2022
GSE166241	Prolonged FOS Activity Disrupts A Global Myogenic Transcriptional Program By Altering 3D Chromatin Architecture in Primary Muscle Progenitor Cells	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	10	HIC TXT SRA Run Selector	Rasim Barutcu	Aug 15, 2022
GSE194268	Loss of Cohesin regulator PDS5A reveals repressive role of Polycomb loops	Expression profiling by high throughput sequencing Other Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	115	BW CSV HIC MCOOL	Oliver Bell	Nov 10, 2023
GSE144412	Hi-CoP, a simple and robust assay for detecting interactions of regulatory regions	Other Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	8	BROADPEAK BW HIC TXT SRA Run Selector	Hao bingtao	Jan 29, 2020
GSE145147	A role of the CTCF binding site at enhancer Ea in Tcra rearrangement	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Other	Mus musculus	40	BED BEDGRAPH BW CSV HIC SRA Run Selector	Hao bingtao	Feb 13, 2020
GSE182995	Chromatin organizer SATB1 controls the cell identity of CD4+ CD8+ double-positive thymocytes by compacting super-enhancers	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	49	BED BEDGRAPH BW CSV HIC TXT SRA Run Selector	Hao bingtao	Sep 02, 2021
GSE265888	Dynamic Chromatin Boundaries of TCR Loci Coincide V(D)J recombination During T Cell Development	Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	79	BED BEDGRAPH BEDPE BROADPEAK BW CSV HIC MATRIX TXT	Hao bingtao	Apr 27, 2024
GSE197024	Epigenetic modules governing skin epidermal homeostasis	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	46	BED BEDPE HIC TXT	Stephen R Brooks	Jan 13, 2023
GSE140975	Wapl repression by Pax5 promotes loop extrusion and V gene recombination at the Igh locus	Other Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	170	BED BEDGRAPH BW HIC TXT SRA Run Selector	Meinrad Busslinger	Jul 01, 2020
GSE210289	Igh and Igk loci use different folding principles for V gene recombination due to distinct chromosomal architectures of pro-B and pre-B cells	Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	36	BED BEDGRAPH HIC MCOOL TXT	Meinrad Busslinger	Jan 15, 2023
GSE115862	Antisense lncRNA transcription mediates DNA demethylation to drive stochastic Protocadherin α promoter choice	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens Mus musculus	72	BW HIC SRA Run Selector	Daniele Canzio	Apr 15, 2019
GSE168524	NEURON-SPECIFIC CHROMOSOMAL MEGADOMAIN ORGANIZATION IS ADAPTIVE TO RECENT RETROTRANSPOSON EXPANSIONS	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Other	Mus musculus Mus spretus	72	HIC TXT XLS SRA Run Selector	Sandhya Chandrasekaran	Oct 11, 2021
GSE115524	HiChIRP reveals RNA-associated chromosome conformation	Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens Mus musculus	42	BIGWIG HIC TXT SRA Run Selector	Howard Y Chang	Dec 04, 2018
GSE243851	Nuclear Organization of Lens Epithelium and Fiber Cells in Newborn Lens	Other Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	8	BED BEDGRAPH BEDPE BW HIC NARROWPEAK	William Chang	Oct 16, 2023
GSE186411	Hnrnpk is essential for embryonic limb bud development as a transcription activator and insulator collaborator	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	34	BW HIC TXT SRA Run Selector	Yuyu Chen	Apr 15, 2024
GSE110061	Direct DNA crosslinking with CAP-C uncovers transcription-dependent chromatin organization at high resolution	Genome binding/occupancy profiling by high throughput sequencing Other	Drosophila melanogaster Homo sapiens Mus musculus	76	BIGWIG HIC NARROWPEAK TXT SRA Run Selector	Youzhi Cheng	Aug 22, 2020
GSE198297	Chromatin state and chromatin architecture in mouse embryonic craniofacial tissue, neural crest cell culture model and human primary craniofacial tissue	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens Mus musculus	85	BEDGRAPH BIGWIG HIC TXT	Justin Cotney	Mar 30, 2023