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4595 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Genome binding/occupancy profiling by high throughput sequencing	Mus musculus		BW
GSE64055	Identifying active cis-regulatory elements during the development of the limbs and external genitalia in the mouse and lizard.	Genome binding/occupancy profiling by high throughput sequencing	Anolis carolinensis Mus musculus	21	BED BW SRA Run Selector	Carlos Rafael Infante	Oct 01, 2015
GSE97367	BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage (Gene expression profiling in several tetrapod species, bulk tissue RNA-seq)	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Anolis carolinensis Gallus gallus Homo sapiens Monodelphis domestica Mus musculus Ornithorhynchus anatinus Xenopus tropicalis	197	BW TXT	Diego Cortez	Oct 27, 2017
GSE104460	PITX1 Promotes Chondrogenesis and Myogenesis in Mouse Hindlimbs Through Conserved Regulatory Targets	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Anolis carolinensis Mus musculus	21	BW	Jialiang Wang	Feb 14, 2018
GSE59801	Comparative epigenomics of human and mouse erythropoiesis	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Third-party reanalysis	Austrofundulus limnaeus Homo sapiens Mus musculus		BED BW TXT	Vijay G Sankaran	Dec 01, 2014
GSE163620	The conservation and divergence of epigenitic reprogramming during mammalian early development	Expression profiling by high throughput sequencing Other Methylation profiling by high throughput sequencing Genome variation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Bos taurus Mus musculus Rattus norvegicus Sus scrofa	188	BW TXT SRA Run Selector	Wei Xie	Nov 26, 2021
GSE142238	Cross-species analysis of melanoma enhancer logic using deep learning	Genome binding/occupancy profiling by high throughput sequencing	Canis lupus familiaris Danio rerio Equus caballus Homo sapiens Mus musculus Sus scrofa domesticus	23	BW SRA Run Selector	Stein Aerts	Apr 22, 2020
GSE136445	A comparison of evolutionary changes and constraints on gene regulation between fin and limb development	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Chiloscyllium punctatum Mus musculus	43	BW	Koh Onimaru	Sep 17, 2019
GSE229156	Hexokinase 2 and lactate	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Cricetulus griseus Mus musculus	56	BW	Nissim Hay	May 05, 2023
GSE131334	Oncogenic CDK13 Mutations Impede Nuclear RNA Surveillance	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Danio rerio Homo sapiens Mus musculus	87	BW TXT	Richard A Young	Apr 21, 2023
GSE183002	Comprehensive genome wide analysis of Satb2 function during vertebrate embryogenesis	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Other	Danio rerio Mus musculus	75	BED BW H5 TXT	Sanjeev Galande	Sep 02, 2021
GSE233198	Differential programs of melanocyte cell states	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Danio rerio Homo sapiens Mus musculus	20	BED BW MTX NARROWPEAK TBI TSV	Vivek T Natarajan	Jul 05, 2024
GSE250263	EVOLUTIONARY CO-OPTION OF AN ANCESTRAL CLOACAL REGULATORY LANDSCAPE WITH THE EMERGENCE OF DIGITS AND GENITALS [ATAC-seq]	Genome binding/occupancy profiling by high throughput sequencing	Danio rerio Mus musculus	14	BW NARROWPEAK	Aurelie Hintermann	Apr 17, 2024
GSE250267	EVOLUTIONARY CO-OPTION OF AN ANCESTRAL CLOACAL REGULATORY LANDSCAPE WITH THE EMERGENCE OF DIGITS AND GENITALS	Genome binding/occupancy profiling by high throughput sequencing Other Expression profiling by high throughput sequencing	Danio rerio Mus musculus	34	BED BW COOL NARROWPEAK TXT	Aurelie Hintermann	Apr 17, 2024
GSE250367	EVOLUTIONARY CO-OPTION OF AN ANCESTRAL CLOACAL REGULATORY LANDSCAPE WITH THE EMERGENCE OF DIGITS AND GENITALS [ChIP-seq]	Genome binding/occupancy profiling by high throughput sequencing Third-party reanalysis	Danio rerio Mus musculus	3	BW NARROWPEAK TXT	Aurelie Hintermann	Apr 17, 2024
GSE85191	Widespread transcriptional pausing and elongation control at enhancers	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Drosophila melanogaster Mus musculus	37	BEDGRAPH BW SRA Run Selector	Karen Adelman	Mar 09, 2018
GSE95781	Histone H3K4 monomethylation catalyzed by Trr and mammalian COMPASS-like proteins at enhancers is dispensable for development and viability	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Drosophila melanogaster Mus musculus	93	BW SRA Run Selector	Ali Shilatifard	Oct 02, 2017
GSE101646	A cryptic Tudor domain links BRWD2/PHIP to COMPASS-mediated histone H3K4 methylation	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Drosophila melanogaster Homo sapiens Mus musculus	84	BW SRA Run Selector	Ali Shilatifard	Nov 02, 2017
GSE109901	Facultative dosage compensation of developmental genes on autosomes in Drosophila and mammals	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Drosophila melanogaster Mus musculus	69	BW	Asifa Akhtar	Jun 29, 2018
GSE111000	Ultra-parallel ChIP-seq by barcoding of intact nuclei	Genome binding/occupancy profiling by high throughput sequencing	Drosophila melanogaster Homo sapiens Mus musculus	44	BED BW GFF NARROWPEAK SRA Run Selector	Thomas Manke	Mar 06, 2018
GSE118785	H3K36me2 recruits DNMT3A and shapes intergenic DNA methylation landscapes	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Drosophila melanogaster Homo sapiens Mus musculus	43	BW TDF SRA Run Selector	Carmen Rivas	Aug 30, 2019