GEO Browser - GEO

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4007 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Genome binding/occupancy profiling by high throughput sequencing	Mus musculus		BED
GSE218881	Nanowell-based single-cell combinatorial indexed ATAC-seq	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	3	ARROW BED SRA Run Selector	Andrew Adey	Feb 08, 2023
GSE24438	Genome wide maps of Dmc1 in testis of Hop2 null mice.	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	20	BAM BED SRA Run Selector	Ivan Gregoretti	Apr 04, 2011
GSE28325	Polycomb-like 3 is a PRC2 component that supports embryonic stem cell self-renewal	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	10	BAM BED SRA Run Selector	Jun S Song	Mar 15, 2012
GSE30199	Base-resolution analyses of parent-of-origin and sequence dependent allele specific DNA methylation in the mouse genome (ChIP-seq and Methyl-seq)	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	10	BAM BED TXT SRA Run Selector	Wei Xie	Feb 15, 2012
GSE30882	Embryonic stem cell based system for the discovery and mapping of developmental transcriptional programs	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	5	BAM BED TXT WIG SRA Run Selector	Shaun Mahony	Nov 12, 2011
GSE31221	TCF7 is a key regulator of the switch of self-renewal and differentiation in a multipotential hematopoietic cell line	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	5	BAM BED TXT SRA Run Selector	Jiaqian Wu	Mar 30, 2012
GSE31456	Transcriptional mechanisms controlling direct motor neuron programming	Expression profiling by array Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	26	BAM BED BW CEL TXT WIG SRA Run Selector	Shaun Mahony	Jul 04, 2013
GSE33632	Genome-wide analysis of histone eviction by FAIRE-Seq	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	13	BAM BED SRA Run Selector	Baoxu Pang	Jun 04, 2013
GSE33634	Topoisomerase II inhibitors and histone eviction	Expression profiling by array Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	62	BAM BED	Baoxu Pang	Jun 04, 2013
GSE33722	Base-resolution analyses of sequence and parent-of-origin dependent DNA methylation	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	17	BAM BED TXT	Wei Xie	Feb 15, 2012
GSE34304	Poised RNA Polymerase II changes over developmental time and prepares genes for future expression	Expression profiling by array Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Drosophila melanogaster Mus musculus	89	BAM BED CEL	Julia Zeitlinger	Dec 20, 2012
GSE36114	Genome-wide analysis of histone modification, protein-DNA binding, cytosine methylation and transcriptome data in mouse and human ES cells and pig iPS cells	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens Mus musculus Sus scrofa	47	BAM BED GTF TXT SRA Run Selector	Pengfei Yu	Feb 28, 2012
GSE38596	Genome-wide maps of cytosine methylation, cytosine hydroxylmethylation and small non coding RNAs in mouse ES cells and upon guided differentiation to mesoendoderm cells	Non-coding RNA profiling by high throughput sequencing Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	36	BAM BED GTF TXT SRA Run Selector	Pengfei Yu	Sep 22, 2012
GSE42413	The Evolution of Lineage-Specific Regulatory Activities in the Human Embryonic Limb	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Macaca mulatta Mus musculus	56	BAM BED BW SRA Run Selector	Justin Cotney	Jul 02, 2013
GSE51336	Mouse regulatory DNA landscapes reveal global principles of cis-regulatory evolution	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	266	BAM BED BIGWIG BROADPEAK NARROWPEAK WIG	ENCODE DCC	Nov 20, 2014
GSE57369	The chromatin modifier CHD8 targets autism risk genes during human neurodevelopment	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	26	BAM BED BW TXT SRA Run Selector	Justin Cotney	Jan 21, 2015
GSE99921	Extensive sex differences at the initiation of meiotic recombination	Genome binding/occupancy profiling by high throughput sequencing Other Third-party reanalysis Methylation profiling by high throughput sequencing	Mus musculus	22	BAM BED BEDGRAPH SRA Run Selector	Kevin Brick	Sep 20, 2018
GSE210779	EKLF/Klf1 regulates erythroid transcription by its pioneering activity and selective control of RNA Pol II pause-release	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	43	BAM BED BW	Kaustav Mukherjee	Jan 18, 2023
GSE36049	A molecular mechanism for compartmentalization and silencing of chromatin domains at the nuclear lamina	Genome binding/occupancy profiling by high throughput sequencing Genome binding/occupancy profiling by genome tiling array	Mus musculus	7	BAR BED BW CEL	Joseph M Zullo	Feb 24, 2012
GSE36241	Identification of a FOXO3/IRF7 circuit that limits inflammatory sequelae of antiviral responses (ChIP-Seq)	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	3	BAR BED TXT SRA Run Selector	Ayush Raman	Sep 19, 2012