GEO Browser - GEO

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75 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter	Platform: GPL24247	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus		XLSX
GSE221710	A genome-wide screen reveals new regulators of the 2-cell-like cell state	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	48	BW TXT XLSX	Pierre-Antoine Defossez	Mar 10, 2023
GSE216371	A single-cell atlas of chromatin accessibility in mouse organogenesis	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	68	BED XLSX	Keyong Sun	Apr 14, 2024
GSE221442	ATAC-sequencing of primary basal-derived mouse prostate organoids treated with vehicle, the mitochondrial pyruvate carrier inhibitor UK5099, or lactate supplementation	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	3	BW XLSX	Andrew Scott Goldstein	Sep 01, 2023
GSE204869	Abnormal Transcriptome-wide of DNA demethylation in Folate deficiency caused neural tube defects [ChIP-seq]	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	4	XLSX	shan wang	Sep 20, 2022
GSE228660	An atlas of gene regulatory networks for T memory cells in youth and old age [scATAC-seq]	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	8	BED MTX RDS TSV XLSX	Joseph Wayman	Aug 07, 2023
GSE227173	Assay for transposase-accessible chromatin-sequencing (ATAC-seq) of heart samples from Wtapflox/flox and Wtap-CKO mice, respectively.	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	2	XLSX	Zheng Chen	Jan 14, 2024
GSE168945	Assay for transposase-accessible chromatin-sequencing (ATAC-seq) of liver samples in Wtapflox/flox and hepatocyte-specific Wtap knockout (Wtap-HKO) mice	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	6	XLSX SRA Run Selector	Zheng Chen	Jun 02, 2022
GSE142519	BACH1 Recruits NANOG and Histone H3 Lysine 4 Methyltransferase MLL/SET1 Complexes to Regulate Enhancer-promoter Activity and Maintains Pluripotency	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	23	BED BROADPEAK NARROWPEAK XLSX SRA Run Selector	Siqing Wang	Jan 12, 2021
GSE207058	BORIS/CTCFL epigenetically reprograms clustered CTCF binding sites into alternative transcriptional start sites.	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	140	BEDGRAPH BIGWIG WIG XLSX	Elena Pugacheva	Jan 03, 2024
GSE180994	Brg1-dependent enhancer-promoter interactions support B cell activation and germinal center formation	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	16	BW NARROWPEAK XLSX SRA Run Selector	Ziv Shulman	Aug 21, 2021
GSE211941	CDCA7-associated global aberrant DNA hypomethylation translates to localized, tissue-specific transcriptional responses [ATAC-seq]	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	2	BW XLSX	Lucia Daxinger	Feb 09, 2024
GSE211943	CDCA7-associated global aberrant DNA hypomethylation translates to localized, tissue-specific transcriptional responses [H3K4me3_brain]	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	5	BW XLSX	Lucia Daxinger	Feb 09, 2024
GSE211947	CDCA7-associated global aberrantDNA hypomethylation translates to localized, tissue-specific transcriptional responses [H3K9me3_H3K27me3_Spleen]	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	10	BW XLSX	Lucia Daxinger	Feb 09, 2024
GSE233946	CTCF coordinates cell fate specification via orchestrating regulatory hubs with pioneer transcription factors	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	18	TXT XLSX	Yuting Liu	Mar 12, 2024
GSE176013	CUT&Tag analysis of H3K36me3 and H3K27me3, in Setd2-WT and -KO murine PDAC cell line	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	4	XLSX SRA Run Selector	Ningning Niu	Feb 06, 2023
GSE180926	CUT&Tag_Foxc2 for Foxc2+ cells from adult mice testes	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	6	BW XLSX SRA Run Selector	Cheng Jin	Aug 21, 2023
GSE197668	Cell-type-specific whole-genome landscape of ΔFOSB binding in nucleus accumbens after chronic cocaine exposure	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	260	BW XLSX	Eric J. Nestler	Jul 08, 2022
GSE154937	ChIP-seq analysis to identify transcriptional targets of BMAL1 mammary epithelial cells in culture, and determine if targets of BMAL1 changed upon lactogen induced differentiation of mammary epithelial cells in culture	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	8	XLSX SRA Run Selector	Theresa M Casey	Jul 22, 2021
GSE194003	Characterization of the crosstalk between Notch signaling and hypoxia	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	30	BW XLSX	Tobias Friedrich	Jul 07, 2022
GSE125203	Chromatin accessibility landscape upon induction of Msgn1, Pax3 and Myf5 in mesodermal cells and identification of conserved Pax3 binding sites and target genes during skeletal myogenesis	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	65	BED XLSX SRA Run Selector	Alessandro Magli	Feb 26, 2019