GEO Browser - GEO

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75 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter	Platform: GPL24247	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus		XLSX
GSE125203	Chromatin accessibility landscape upon induction of Msgn1, Pax3 and Myf5 in mesodermal cells and identification of conserved Pax3 binding sites and target genes during skeletal myogenesis	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	65	BED XLSX SRA Run Selector	Alessandro Magli	Feb 26, 2019
GSE197926	TAD Evolutionary and functional characterization reveals diversity in mammalian TAD boundary properties and function	Other Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens Hylobates moloch Macaca mulatta Mus caroli Mus musculus Mus pahari Nomascus leucogenys Rattus norvegicus	85	BED BEDGRAPH BIGWIG BW COOL XLSX	Mariam Okhovat	Oct 20, 2023
GSE198517	Inhibition of SWI/SNF broadly disrupts enhancers and reveals remodeler redundancy at promoters	Expression profiling by high throughput sequencing Other Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	107	BW TSV XLSX	Karen Adelman	Nov 02, 2023
GSE207058	BORIS/CTCFL epigenetically reprograms clustered CTCF binding sites into alternative transcriptional start sites.	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	140	BEDGRAPH BIGWIG WIG XLSX	Elena Pugacheva	Jan 03, 2024
GSE207163	Transcriptional repression by a secondary DNA binding surface of DNA topoisomerase I safeguards against hypertranscription	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens Mus musculus	62	BED BW RESULTS TXT XLSX	Zhenhua hu	May 29, 2023
GSE215086	Knocking out BATF improves CAR-T cell efficacy by resisting exhaustion and forming central memory cells	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	40	BW XLSX	Xingying Zhang	Oct 12, 2022
GSE218430	LncRNA SNHG26 facilitates inflammatory to proliferative state transition of keratinocyte progenitors during wound healing	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Other	Homo sapiens Mus musculus	17	XLSX	Ning Xu Landén	Aug 26, 2024
GSE134253	Muscle-secreted G-CSF as a metabolic niche factor ameliorates loss of muscle stem cell in aged mice	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	9	CSV XLSX	Yong Zhang	Sep 06, 2019
GSE135225	Oct4-mediated inhibition of Lsd1 activity promotes the active and primed state of pluripotency enhancers [ChIP-seq]	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	4	BEDGRAPH XLSX SRA Run Selector	Humaira Gowher	Jun 29, 2020
GSE135227	Oct4-mediated inhibition of Lsd1 activity promotes the active and primed state of pluripotency enhancers	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	6	BEDGRAPH TSV XLSX	Humaira Gowher	Jun 29, 2020
GSE141325	RNA-seq and ATAC-seq of liver samples in Mettl3 flox/flox and hepatocyte-specific Mettl3 knockout (HKO) mice	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	4	XLSX	Zheng Chen	Oct 29, 2021
GSE142519	BACH1 Recruits NANOG and Histone H3 Lysine 4 Methyltransferase MLL/SET1 Complexes to Regulate Enhancer-promoter Activity and Maintains Pluripotency	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	23	BED BROADPEAK NARROWPEAK XLSX SRA Run Selector	Siqing Wang	Jan 12, 2021
GSE150822	Identification of nucleolar associated domains (NADS)	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	24	BW CSV XLSX SRA Run Selector	Raffaella Santoro	Aug 11, 2021
GSE154937	ChIP-seq analysis to identify transcriptional targets of BMAL1 mammary epithelial cells in culture, and determine if targets of BMAL1 changed upon lactogen induced differentiation of mammary epithelial cells in culture	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	8	XLSX SRA Run Selector	Theresa M Casey	Jul 22, 2021
GSE161570	KMT2C Loss Promotes Small Cell Lung Cancer Metastasis through DNMT3A-mediated Epigenetic Reprogramming	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Other	Mus musculus	55	BED BW CGMAP CSV GAPPEDPEAK TAR XLSX SRA Run Selector	Xaingyu Pan	Feb 23, 2022
GSE164904	Comprehensive maps of transcription factor (TF) binding sites in mouse (ATAC-Seq)	Genome binding/occupancy profiling by high throughput sequencing Third-party reanalysis	Mus musculus	88	BW XLSX SRA Run Selector	Yongbing Zhao	Jul 21, 2022
GSE168129	Mutations in BCOR, a novel co-repressor of OTX2/CRX, cause pediatric inherited retinal degeneration	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	14	BED BIGWIG TXT XLSX SRA Run Selector	Awais Javed	Sep 10, 2022
GSE168945	Assay for transposase-accessible chromatin-sequencing (ATAC-seq) of liver samples in Wtapflox/flox and hepatocyte-specific Wtap knockout (Wtap-HKO) mice	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	6	XLSX SRA Run Selector	Zheng Chen	Jun 02, 2022
GSE169044	Transcription factor antagonism regulates heterogeneity in embryonic stem cell states	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	101	BIGWIG TAR XLSX SRA Run Selector	Sofia Hu	Nov 21, 2022
GSE169262	Identification of a modular super-enhancer in murine retinal development	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	43	BED BW MTX TSV TXT XLS XLSX SRA Run Selector	Victoria Honnell	Nov 16, 2021