GEO Browser - GEO

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448 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter	Platform: GPL24247	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus		TSV
GSE204952	Skin basal cell carcinomas assemble a pro-tumorigenic spatially organized and self-propagating Trem2+ myeloid niche	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	11	ZIP TSV TBI BW	Anthony Oro	Mar 28, 2023
GSE261013	B cell differentiation into germinal center and antibody-secreting cells depends on SMARCA5-mediated chromatin remodeling[scMultiome - RNA + ATAC]	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	2	ZIP TSV	Ziv Shulman	Sep 01, 2024
GSE261015	B cell differentiation into germinal center and antibody-secreting cells depends on SMARCA5-mediated chromatin remodeling	Other Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	31	ZIP TSV	Ziv Shulman	Sep 01, 2024
GSE135227	Oct4-mediated inhibition of Lsd1 activity promotes the active and primed state of pluripotency enhancers	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	6	XLSX TSV BEDGRAPH	Humaira Gowher	Jun 29, 2020
GSE169262	Identification of a modular super-enhancer in murine retinal development	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	43	XLSX XLS TXT TSV MTX BW BED SRA Run Selector	Victoria Honnell	Nov 16, 2021
GSE198517	Inhibition of SWI/SNF broadly disrupts enhancers and reveals remodeler redundancy at promoters	Expression profiling by high throughput sequencing Other Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	107	XLSX TSV BW	Karen Adelman	Nov 02, 2023
GSE198730	Transcriptomics, Regulatory Syntax, and Enhancer Identification in Heterogenous Populations of Mesoderm-Induced ESCs at Single-Cell Resolution	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	39	XLSX TSV TBI MTX HIC H5 CSV BED	Vittorio Sartorelli	Jul 31, 2022
GSE208742	Direct neuronal reprogramming of mouse astrocytes is associated with multiscale epigenome remodeling and requires Yy1	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Other	Mus musculus	64	XLSX TXT TSV TAB NARROWPEAK MTX BW BEDGRAPH BED SRA Run Selector	Boyan Bonev	Apr 30, 2024
GSE216542	scRNA-seq, snATAC-seq, and spatial transcriptomics analysis of mammary glands of aged female mice	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	22	XLSX TXT TSV TIFF RDS PNG MTX JSON JPG CSV	Olga Anczukow	Sep 29, 2024
GSE228445	Dermal and hypodermal macrophages and dendritic cells	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	42	XLSX TSV MTX CSV BED	Keisuke Nagao	Sep 06, 2023
GSE228660	An atlas of gene regulatory networks for T memory cells in youth and old age [scATAC-seq]	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	8	XLSX TSV RDS MTX BED	Joseph Wayman	Aug 07, 2023
GSE242974	The role of SMC3 in heart development by regulating super-enhancer associated genes	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	35	XLSX XLS TSV MTX BW BEDGRAPH BED	bowen zhang	Sep 14, 2023
GSE248152	Comprehensive mapping of epigenetic events during the T-follicular helper-to-T-regulatory type-1 transdifferentiation pathway reveal a global poised state	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	31	XLSX XLS TXT TSV H5	Josep Garnica	Nov 07, 2024
GSE250192	Global epigenetic stability of liver-resident invariant natural killer T cells in response to cues capable of inducing transcriptional re-programming	Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	24	XLSX TXT TSV H5	Josep Garnica	Oct 02, 2024
GSE281085	Nuclei isolation from frozen heart tissues through an easy-to-operating, prompt, and inexpensive method for single-nucleus Multiome-seq	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	18	XLSX TSV H5	Zhao Wang	Jan 01, 2025
GSE137050	The comparative roadmaps of reprogramming and transformation unveiled that cellular plasticity is broadly controlled by Bcl11b and Atoh8	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	59	XLS TXT TSV MTX BEDGRAPH	Fabrice Lavial	May 06, 2022
GSE156746	Myc regulates the lineage commitment of transformed hepatocytes during liver tumorigenesis	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	16	XLS TSV	Iros Barozzi	Jul 24, 2023
GSE196378	Nuclear Vav3 is required for canonical PRC1 activity in B-cell lymphoblastic leukemogenesis	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	18	XLS TSV BIGWIG	Ramesh C Nayak	Apr 16, 2022
GSE225084	Evaluating the mouse neural precursor line, SN4741, as a suitable proxy for midbrain dopaminergic neurons	Expression profiling by high throughput sequencing Other Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	28	XLS TSV MTX	Andrew S. McCallion	Feb 13, 2023
GSE154175	A primed immune transcriptional program is activated in oligodendroglia in multiple sclerosis [SCATAC_10X]	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	7	WIG TSV RDS H5 CSV BED SRA Run Selector	Eneritz Agirre	May 21, 2021