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88 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter	Platform: GPL24247	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus		TBI
GSE141825	Single-cell ATAC-seq of mouse thymus iNKT cells	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	5	BED CSV H5 MTX TBI TSV SRA Run Selector	Indra Adrianto	Jun 27, 2023
GSE158196	Differential chromatin binding of the lung lineage transcription factor NKX2-1 resolves opposing murine alveolar cell fates in vivo [scATAC-Seq]	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	1	BED BEDGRAPH BROADPEAK CLOUPE CSV H5 TBI TSV SRA Run Selector	Danielle R. Little	Mar 08, 2021
GSE158205	Differential chromatin binding of the lung lineage transcription factor NKX2-1 resolves opposing murine alveolar cell fates in vivo	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	78	BED BEDGRAPH BROADPEAK CLOUPE CSV H5 NARROWPEAK TBI TSV	Danielle R. Little	Mar 08, 2021
GSE183310	Decoding the PITX2 controlled genetic network in atrial fibrillation	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	8	BED CSV H5 MTX TBI TSV TXT SRA Run Selector	Jeffrey D. Steimle	Apr 28, 2022
GSE189210	Parallel single cell multi-omics analysis of neonatal skin reveals transitional fibroblast states that restrict differentiation into distinct fates	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	2	BED CSV H5 MTX TBI TSV SRA Run Selector	Sean Thompson	Nov 24, 2021
GSE190054	FoxP3 associates with enhancer-promoter loops to regulate Treg-specific gene expression [ATAC-seq]	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	1	BED MTX TBI TSV TXT SRA Run Selector	CBDM Lab	Dec 07, 2021
GSE190057	FoxP3 associates with enhancer-promoter loops to regulate Treg-specific gene expression	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	15	BED HIC MTX TBI TSV TXT	CBDM Lab	Dec 03, 2021
GSE194226	Single cell ATAC-seq of mouse retinal CX3CR1+ myeloid cells for Naive, PBS and 4xLPS treatment	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	3	BED CSV MTX TBI TSV	Mike Sapieha	Feb 22, 2023
GSE198730	Transcriptomics, Regulatory Syntax, and Enhancer Identification in Heterogenous Populations of Mesoderm-Induced ESCs at Single-Cell Resolution	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	39	BED CSV H5 HIC MTX TBI TSV XLSX	Vittorio Sartorelli	Jul 31, 2022
GSE199556	Longitudinal single cell transcriptional and epigenetic mapping of effector, memory, and exhausted CD8 T cells reveals shared biological circuits across distinct cell fates [scATAC-Seq 1]	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	2	BED CSV H5 TBI TSV	E JOHN WHERRY	Oct 31, 2022
GSE199557	Longitudinal single cell transcriptional and epigenetic mapping of effector, memory, and exhausted CD8 T cells reveals shared biological circuits across distinct cell fates [scATAC-Seq 2]	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	8	BED CSV H5 TBI TSV	E JOHN WHERRY	Oct 31, 2022
GSE210938	Single cell ATAC-seq analysis of the kidney in a murine endotoxemia model	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	8	BED CLOUPE H5 TBI TSV	Takashi Hato	Aug 17, 2022
GSE213597	ETV6 Represses Inflammatory Response Genes and Regulates HSPC Function During Stress Hematopoiesis in Mice	Genome binding/occupancy profiling by high throughput sequencing Other Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	27	BED BW HIC MTX TBI TSV	Kim Nichols	Aug 24, 2023
GSE216910	Single-cell epigenomics and high-density genetic variation resolve the architecture of the Treg regulatory network [scATAC-seq]	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	4	BED MTX TBI TSV TXT	CBDM Lab	Feb 01, 2023
GSE222373	TBX5 KO multiome	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	8	BED CSV H5 TBI TSV	William T. Pu	Aug 11, 2023
GSE222970	Tbx5 maintains atrial identity by regulating an atrial enhancer network	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	28	BED BW CSV H5 TBI TSV TXT	William T. Pu	Aug 11, 2023
GSE229065	Effect of the Regnase-1/3-Nfkbiz axis on the epigenomic profile in mouse Flt3–CD48–Lin–Sca1+Kit+ (LSK) cells	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	4	BED CSV H5 TBI TSV	Takuya Uehata	Jul 31, 2023
GSE230363	Longitudinal single cell transcriptional and epigenetic mapping of effector, memory, and exhausted CD8 T cells reveals shared biological circuits across distinct cell fates [scRNA-seq and scATAC-seq coAssay]	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	16	BED H5 MTX TBI TSV	E JOHN WHERRY	May 31, 2023
GSE232001	Multiomic Single Cell Evaluation Reveals Inflammatory Cytokines Affect Innate Lymphoid Cell Fate After Allogeneic Stem Cell Transplantation [10X Multiome]	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	12	BED CSV H5 TBI TSV	SONIA LAURIE	Sep 14, 2023
GSE232003	Multiomic Single Cell Evaluation Reveals Inflammatory Cytokines Affect Innate Lymphoid Cell Fate After Allogeneic Stem Cell Transplantation	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	38	BED BW CSV H5 NARROWPEAK TBI TSV	SONIA LAURIE	Sep 14, 2023