GEO Browser - GEO

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35 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter	Platform: GPL24247	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus		TAB
GSE176461	DNA sequence and chromatin modifiers determine epigenetic bistability at imprinting control regions	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	7	COV TAB WIG	Tuncay Baubec	Jul 20, 2022
GSE199541	Dissecting the roles of MBD2 isoforms and domains in regulating NuRD complex func-tion during cellular differentiation	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	30	TAB WIG	Tuncay Baubec	May 23, 2023
GSE183419	Characterization of active chromatin marks by CUT&Tag after FOXD3 depletion	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	28	BIGWIG TAB SRA Run Selector	Robert Blelloch	Apr 30, 2023
GSE208742	Direct neuronal reprogramming of mouse astrocytes is associated with multiscale epigenome remodeling and requires Yy1	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Other	Mus musculus	64	BED BEDGRAPH BW MTX NARROWPEAK TAB TSV TXT XLSX SRA Run Selector	Boyan Bonev	Apr 30, 2024
GSE207572	Zfp281 and Zfp148 control CD4+ T cell thymic development and Th2 functions	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	38	BW CSV H5 JPG JSON PNG TAB TBI TIFF TSV	Remy Bosselut	Nov 10, 2023
GSE152663	SWI/SNF inactivation in the endometrial epithelium leads to loss of epithelial integrity	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	16	BROADPEAK TAB	Ronald L. Chandler	Oct 20, 2020
GSE234680	THAP1 is a master regulator of zinc finger transcription factors guiding gastrulation of murine embryos	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus Rattus norvegicus	53	BIGWIG CLOUPE TAB TXT	Fubo Cheng	Aug 01, 2024
GSE161475	High dose IFN-𝛽 activates GAF to enhance expression of ISGF3 target genes in epithelial cells	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	70	CSV TAB TXT SRA Run Selector	Quen Cheng	Mar 05, 2021
GSE218302	Disruption of the ATXN1-CIC complex reveals the role of additional nuclear ATXN1 interactors in spinocerebellar ataxia type 1	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	104	BW TAB	Stephanie Lynn Coffin	Dec 13, 2022
GSE218649	Age-associated changes in murine endothelial gene expression and chromatin accessibility correlate with impaired blood-brain barrier integrity and elevated risk of intracerebral hemorrhage	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	79	BED TAB	Gilles Gasparoni	Sep 20, 2023
GSE171771	Genome-wide quantitative functional enhancer map of mESCs, in the pluripotent state and after induced differentiation	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	9	BED BW NARROWPEAK TAB SRA Run Selector	Laura V Glaser	Oct 21, 2021
GSE183619	BAF complex cooperates with c-Myc to orchestrate early fate decisions of CD8 T cells	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Expression profiling by array	Mus musculus	101	BED BIGWIG CEL TAB	Douglas R Green	Apr 24, 2022
GSE138017	H3K4methylation in Setd1a loss-of-function Raw264.7 cells upon LPS or Dex+LPS stimulation	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	48	BW TAB TXT SRA Run Selector	Franziska Greulich	Dec 31, 2020
GSE214824	WT, LKB1 KO, and LKB1/CRTC2 KO mouse embryonic fibroblasts	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	60	BW TAB	Russell Jones	May 11, 2023
GSE230801	Predisposal of Interferon Regulatory Factor 1 Deficiency to Accumulate DNA Damage and Promote Osteoarthritis Development in Cartilage	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	15	TAB	Jin-Hong Kim	Mar 04, 2024
GSE171184	Integration of Feeding Behaviour by the Liver Circadian Clock Reveals Network Dependency of Metabolic Rhythms	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	38	BW NARROWPEAK TAB	Paolo Kunderfranco	Jun 01, 2021
GSE200472	NOTCH-YAP1/TEAD-DNMT1 axis drives hepatocyte reprogramming into intrahepatic cholangiocarcinoma	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	19	BW TAB WIG	Shuchang Liu	Jul 25, 2023
GSE245549	A cis-regulatory module underlies retinal ganglion cell genesis and axonogenesis	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	48	BW MTX TAB TSV	Shuchang Liu	Jun 06, 2024
GSE190813	Pan-AMPK activator O304 prevents gene expression changes and re-mobilization of histone marks in islets of diet-induced obese mice	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	36	TAB	Ana Rosa López-Pérez	Dec 20, 2021
GSE201655	An activity-specificity trade-off encoded in human transcription factors	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens Mus musculus	100	CSV MTX NARROWPEAK TAB TSV	Alexandre P Magalhaes	Feb 27, 2024