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560 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter	Platform: GPL24247	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus		SRA Run Selector
GSE110061	Direct DNA crosslinking with CAP-C uncovers transcription-dependent chromatin organization at high resolution	Genome binding/occupancy profiling by high throughput sequencing Other	Drosophila melanogaster Homo sapiens Mus musculus	76	BIGWIG HIC NARROWPEAK TXT SRA Run Selector	Youzhi Cheng	Aug 22, 2020
GSE118785	H3K36me2 recruits DNMT3A and shapes intergenic DNA methylation landscapes	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Drosophila melanogaster Homo sapiens Mus musculus	43	BW TDF SRA Run Selector	Kieran Campbell	Aug 30, 2019
GSE147879	Two competing mechanisms of DNMT3A recruitment regulate the dynamics of de novo DNA methylation at CpG islands	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Drosophila melanogaster Mus musculus	78	BED BEDGRAPH BW SRA Run Selector	Jacek Majewski	May 13, 2021
GSE155677	Multimodal profiling of the transcriptional regulatory landscape of the developing mouse cortex identifies Neurog2 as a key epigenome remodeler	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Other	Escherichia coli Mus musculus	36	BED BEDGRAPH BW FA MTX PICKLE TAR TSV TXT SRA Run Selector	Boyan Bonev	Jan 27, 2022
GSE160653	The chromatin and regulatory properties of pluripotency-associated poised enhancers are conserved in vivo [ATAC-seq]	Genome binding/occupancy profiling by high throughput sequencing	Gallus gallus Mus musculus	3	BEDGRAPH NARROWPEAK SRA Run Selector	Giuliano Crispatzu	Dec 31, 2020
GSE160654	The chromatin and regulatory properties of pluripotency-associated poised enhancers are conserved in vivo [ChIP-seq]	Genome binding/occupancy profiling by high throughput sequencing	Gallus gallus Mus musculus	12	BEDGRAPH BROADPEAK NARROWPEAK SRA Run Selector	Giuliano Crispatzu	Dec 31, 2020
GSE114981	Activation of HOTTIP lncRNA perturbs HSC function leading to AML like disease	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens Mus musculus	66	BED TXT SRA Run Selector	Suming Huang	Dec 03, 2019
GSE115096	HOXBLINC is aberrantly expressed in acute myeloid leukemia and functions as a potent oncogenic long non-coding RNA in leukemogenesis	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens Mus musculus	40	BED TXT SRA Run Selector	Suming Huang	Jan 27, 2021
GSE125203	Chromatin accessibility landscape upon induction of Msgn1, Pax3 and Myf5 in mesodermal cells and identification of conserved Pax3 binding sites and target genes during skeletal myogenesis	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	65	BED XLSX SRA Run Selector	Alessandro Magli	Feb 26, 2019
GSE128671	Replicational dilution of H3K27me3 in mammalian cells and the role of poised promoters	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	47	BW MTX TSV TXT SRA Run Selector	Ramesh Shivdasani	Jan 17, 2020
GSE131098	Hammer-seq to measure kinetics of DNA methylation maintenance in HeLa cells	Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	126	BIGWIG TXT SRA Run Selector	Zhuqiang Zhang	Jun 26, 2020
GSE131577	Combined Cohesin-Runx1 Deficiency Synergistically Perturbs Chromatin Looping and Causes Myelodysplastic Syndromes [ChIP-seq]	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	52	BED SRA Run Selector	Yotaro Ochi	Apr 07, 2020
GSE134901	Nutrient regulation of the islet epigenome controls adaptive insulin secretion	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus Mus musculus	131	BEDGRAPH DIFF TXT SRA Run Selector	Matthew Wortham	Feb 24, 2023
GSE140203	Integrative single-cell chromatin and transcriptome profiling uncovers cell-type specific regulatory interactions	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	20	BED TXT SRA Run Selector	Sai Ma	Oct 23, 2020
GSE143148	The histone demethylase JMJD2B regulates endothelial-to-mesenchymal transition [HTS]	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	27	BED CSV TSV SRA Run Selector	David John	Jan 08, 2020
GSE144336	Defining genome architecture at base-pair resolution	Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens Mus musculus	40	BW SRA Run Selector	Peng Hua	Apr 16, 2021
GSE144757	Genome-wide maps of QKI-5, SREBP2, and POL II in eye lens cells	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	17	BED NARROWPEAK SRA Run Selector	Chenxi He	Jan 29, 2021
GSE152020	Joint profiling of histone modifications and transcriptome in single cells from mouse brain	Other Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	102	SRA Run Selector	Zhu Chenxu	Dec 15, 2020
GSE153651	m6A directs the demethylation of histone H3K9me2 co-transcriptionall	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens Mus musculus	56	BED BW TXT SRA Run Selector	linjian xia	Jul 01, 2020
GSE154451	Methylation and gene expression data obtained from Dnmt3b+/+, Dnmt3bD/D and Dnmt3bCI/CI MYC induced T-cell lymphomas (MTCLs).	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	31	BIGWIG TXT SRA Run Selector	Rene Opavsky	Dec 30, 2020