GEO Browser - GEO

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560 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter	Platform: GPL24247	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus		SRA Run Selector
GSE90536	Foxa and Hnf4alpha targets during conversion from mouse embryonic fibroblasts (MEFs) to hepatocyte-like (iHep) cells	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	21	BED BW SRA Run Selector	Atsushi Suzuki	Aug 06, 2020
GSE90538	Foxa and Hnf4alpha targets during conversion from mouse embryonic fibroblasts (MEFs) to hepatocyte-like (iHep) cells and hepatocytes (Hep).	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	24	BED BW SRA Run Selector	Atsushi Suzuki	Aug 06, 2020
GSE98101	Spatial-temporal epigenetic landscape of mouse gastrula	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	120	BW TAGALIGN TXT XLS SRA Run Selector	Naihe Jing	Oct 07, 2019
GSE106379	Genetics, sex and life experience influence DNA methylation in the mouse	Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	36	BIGWIG TXT SRA Run Selector	Paul A Wade	Oct 24, 2018
GSE108770	Hypoxia-induced priming of microglial inflammatory gene expression is associated with TLR4 signaling H3K4me3 enrichment	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	28	BEDGRAPH DIFF TDF SRA Run Selector	Jyoti Watters	Feb 04, 2020
GSE108961	Single-cell transcriptomics reveals chemotaxis mediated intra-organ crosstalk during cardiogenesis [ChIP-seq]	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	10	BW SRA Run Selector	Haiqing Xiong	Jun 22, 2019
GSE109757	Profiling chromatin state by single-cell itChIP-seq [itChIP-seq]	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	43	BW SRA Run Selector	Chen Li	Jul 11, 2019
GSE110061	Direct DNA crosslinking with CAP-C uncovers transcription-dependent chromatin organization at high resolution	Genome binding/occupancy profiling by high throughput sequencing Other	Drosophila melanogaster Homo sapiens Mus musculus	76	BIGWIG HIC NARROWPEAK TXT SRA Run Selector	Youzhi Cheng	Aug 22, 2020
GSE114981	Activation of HOTTIP lncRNA perturbs HSC function leading to AML like disease	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens Mus musculus	66	BED TXT SRA Run Selector	Suming Huang	Dec 03, 2019
GSE115096	HOXBLINC is aberrantly expressed in acute myeloid leukemia and functions as a potent oncogenic long non-coding RNA in leukemogenesis	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens Mus musculus	40	BED TXT SRA Run Selector	Suming Huang	Jan 27, 2021
GSE116603	Dissecting the Role of H3K27 Acetylation and Methylation in PRC2 Mediated Control of Cellular Identity	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	50	GAPPEDPEAK NARROWPEAK TXT SRA Run Selector	Diego Pasini	Feb 28, 2019
GSE117332	Targets of DNA binding, N-terminal, or C-terminal domain swapped mutant forms fo Foxa proteins in induced hepatocyte-like (iHep) cells.	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	18	BED BW SRA Run Selector	Atsushi Suzuki	Aug 06, 2020
GSE117529	RNA/WES/ATAC/scRNA sequencing of murine melanoma primary and LN metastases	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	58	BW MTX TSV TXT SRA Run Selector	Nathan Edward Reticker-Flynn	Jun 14, 2021
GSE118785	H3K36me2 recruits DNMT3A and shapes intergenic DNA methylation landscapes	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Drosophila melanogaster Homo sapiens Mus musculus	43	BW TDF SRA Run Selector	Kieran Campbell	Aug 30, 2019
GSE119306	Aberrant chromatin landscape upon loss of the H3.3 chaperone Daxx leads to Pu.1-mediated neutrophilia and inflammation [ATAC-Seq]	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	24	BED NARROWPEAK TXT SRA Run Selector	Paolo Salomoni	Aug 31, 2021
GSE119877	Genome-wide maps of the chromatin and transcription state transition during conversion from mouse embryonic fibroblasts (MEFs) to hepatocyte-like cells (iHep)	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	25	BW SRA Run Selector	Atsushi Suzuki	Aug 06, 2020
GSE119880	Targets of Hnf4alpha during conversion from mouse embryonic fibroblasts (MEFs) to hepatocyte-like (iHep) cells.	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	6	BED BW SRA Run Selector	Atsushi Suzuki	Aug 06, 2020
GSE120393	Polycomb Mediated Chromatin Organization Reveals Transcriptional Silencers Required for Embryonic Development	Other Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	107	BIGWIG BROADPEAK FPKM_TRACKING HIC NARROWPEAK TXT SRA Run Selector	Chia-Lin Wei	Jan 07, 2020
GSE122589	Transcription factor activity and nucleosome organisation in mitosis	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	97	BW TSV SRA Run Selector	Pablo Navarro	Dec 04, 2018
GSE123651	CTCF Functions as an Insulator for Somatic Genes and a Structural Regulator for Pluripotent Genes during Reprogramming [ChIP-seq]	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	59	BED BW SRA Run Selector	ya wei song	Apr 05, 2022