GEO Browser - GEO

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65 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter	Platform: GPL24247	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus		HIC
GSE110061	Direct DNA crosslinking with CAP-C uncovers transcription-dependent chromatin organization at high resolution	Genome binding/occupancy profiling by high throughput sequencing Other	Drosophila melanogaster Homo sapiens Mus musculus	76	BIGWIG HIC NARROWPEAK TXT SRA Run Selector	Youzhi Cheng	Aug 22, 2020
GSE120393	Polycomb Mediated Chromatin Organization Reveals Transcriptional Silencers Required for Embryonic Development	Other Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	107	BIGWIG BROADPEAK FPKM_TRACKING HIC NARROWPEAK TXT SRA Run Selector	Chia-Lin Wei	Jan 07, 2020
GSE123670	CTCF Functions as an Insulator for Somatic Genes and a Structural Regulator for Pluripotent Genes during Reprogramming	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	187	BED BW HIC	ya wei song	Apr 05, 2022
GSE125595	RNA interactions are essential for proper CTCF function	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	24	BW CLOUPE HIC TXT SRA Run Selector	Ricardo Saldana-Meyer	Sep 12, 2019
GSE125972	A distal super enhancer mediates estrogen-dependent mouse uterine–specific gene transcription of Insulin-like growth factor 1 (Igf1)	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	38	BIGWIG HIC TXT SRA Run Selector	Sylvia C Hewitt	May 08, 2019
GSE126362	Pax3 cooperates with Ldb1 to direct local chromosome architecture during lineage specification	Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	60	BED HIC SRA Run Selector	Alessandro Magli	Apr 16, 2019
GSE130725	H4K20me3 methyltransferase SUV420H2 shapes the three-dimensional chromatin landscape of pluripotent embryonic stem cells	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	26	BEDGRAPH HIC TXT	Benjamin L Kidder	Nov 13, 2020
GSE140363	Defining the relative and combined contribution of CTCF and CTCFL to genomic regulation	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	122	BED BEDGRAPH BROADPEAK BW CSV HIC NARROWPEAK SRA Run Selector	Nishana Mayilaadumveettil	Apr 14, 2020
GSE143293	Histone 1 deficiency drives lymphomagenesis through disruption of 3D chromatin architecture	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	53	HIC MTX TSV TXT SRA Run Selector	Matt Teater	Sep 02, 2020
GSE144834	Balancing cohesin eviction and retention prevents aberrant chromosomal interactions, Polycomb-mediated repression, and X-inactivation	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Other	Mus musculus	94	BW HIC TXT SRA Run Selector	Andrea June Kriz	Mar 15, 2021
GSE153402	CTCF Mediates Dosage and Sequence-context-dependent Transcriptional Insulation through Formation of Local Chromatin Domains [Hi-C and PLAC-seq]	Other Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	14	HIC TXT SRA Run Selector	Bing Ren	Jul 06, 2020
GSE153403	CTCF Mediates Dosage and Sequence-context-dependent Transcriptional Insulation through Formation of Local Chromatin Domains	Other Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	88	BW HIC TXT	Bing Ren	Jul 06, 2020
GSE154051	Calcium Signaling Prompts NIPBL Recruitment at Active Enhancers and Promoters via Distinct Mechanisms to Reconstruct Genome Compartmentalization	Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	165	BEDGRAPH BW HIC TXT SRA Run Selector	Cornelis Murre	Oct 10, 2020
GSE157139	CRISPR and biochemical screens identify MAZ as a co-factor in CTCF-mediated insulation at Hox clusters	Expression profiling by high throughput sequencing Other Genome binding/occupancy profiling by high throughput sequencing	Mus musculus synthetic construct	138	BEDGRAPH BW HIC NARROWPEAK TXT	Danny Reinberg	Feb 06, 2022
GSE157339	Architectural role of cell-fate-instructive transcription factor MyoD in orchestrating 3D genome organization in muscle cells.	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	122	BEDPE BW H5 HIC TXT XLS	Yong Zhang	May 01, 2021
GSE159468	Hijacking of transcriptional condensates by endogenous retroviruses	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	78	BED BW HIC TAR TSV SRA Run Selector	Sara Hetzel	Mar 30, 2022
GSE162617	Transcription Factors Recruit the Cohesin Loader NIPBL to Promote Chromatin Looping and Long-range Gene Regulation	Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	11	HIC MCOOL SRA Run Selector	Gordon Hager	Jun 01, 2021
GSE167358	Distal and proximal cis-regulatory elements sense X-dosage and developmental state at the Xist locus	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus synthetic construct	164	BW HIC NARROWPEAK	Till Schwämmle	Mar 04, 2021
GSE168524	NEURON-SPECIFIC CHROMOSOMAL MEGADOMAIN ORGANIZATION IS ADAPTIVE TO RECENT RETROTRANSPOSON EXPANSIONS	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Other	Mus musculus Mus spretus	72	HIC TXT XLS SRA Run Selector	Sandhya Chandrasekaran	Oct 11, 2021
GSE169121	Tcf1 is essential for initiation of oncogenic Notch1-driven chromatin topology.	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens Mus musculus	61	BEDGRAPH BEDPE HIC TXT	Nadine Fournier	Jan 21, 2022