GEO Browser - GEO

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469 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter	Platform: GPL24247	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus		BIGWIG
GSE183419	Characterization of active chromatin marks by CUT&Tag after FOXD3 depletion	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	28	BIGWIG TAB SRA Run Selector	Robert Blelloch	Apr 30, 2023
GSE199125	Chromatin accessibility analysis of wild type bone marrow-derived macrophages in response to Anisomycin, type I interferons and the combination of them or with p38 MAPK inhibitor PH-797804 (ATAC-Seq IFNb)	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	15	BIGWIG	Laura Boccuni	Dec 18, 2022
GSE199126	Chromatin accessibility analysis of wild type bone marrow-derived macrophages in response to Anisomycin, type II interferon and the combination of them or with p38 MAPK inhibitor PH-797804 (ATAC-Seq IFNg)	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	15	BIGWIG	Laura Boccuni	Dec 18, 2022
GSE199127	c-Jun and CREB1 transcription factor binding analysis in wild type bone marrow-derived macrophages in response to type II interferon and stress	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	42	BIGWIG BW NARROWPEAK	Laura Boccuni	Dec 18, 2022
GSE123743	Xist RNA-dependent Polycomb recruitment through the B and C repeats results in mild relaxation of X-linked transcriptional silencing	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	21	BIGWIG TXT	Aurélie Bousard	Aug 28, 2019
GSE150186	Brahma safeguards canalization of cardiac mesoderm differentiation	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	148	BIGWIG BW	Benoit Bruneau	Oct 26, 2021
GSE210138	Identification of cross-species preserved cis-regulatory elements containing type 2 diabetes GWAS variants	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	386	BED BIGWIG NARROWPEAK SRA Run Selector	Carol Bult	Dec 31, 2023
GSE179577	INO80 requires a polycomb subunit to regulate the establishment of poised chromatin in murine spermatocytes [ATAC-seq]	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	6	BIGWIG SRA Run Selector	Prabuddha Chakraborty	Dec 21, 2021
GSE198564	An Epigenetic Memory of Inflammation Induces Context-Dependent Lineage Plasticity in the Pancreas with Divergent Phenotypic Outcomes	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	115	BED BIGWIG BW H5 MTX TSV TXT	Rohit Chandwani	Oct 24, 2023
GSE266098	SETDB1 suppresses interferon responses and NK cell-mediated immunosurveillance specifically in monocytic AML: H3K9me3 ChIP-seq of cSAM leukemia cells with Setdb1 depletion [ChIP-seq]	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	2	BIGWIG	Yu-Hsuan Chang	Aug 03, 2024
GSE211541	Opposing transcriptional circuits governing skeletal muscle development and maturation revealed at single nuclear resolution [ChIP-seq]	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	6	BED BIGWIG	kenian chen	May 31, 2023
GSE211545	Opposing transcriptional circuits governing skeletal muscle development and maturation revealed at single nuclear resolution.	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	16	BED BIGWIG MTX TSV	kenian chen	May 31, 2023
GSE223657	Missense mutations in CRX homeodomain cause dominant retinopathies through two distinct mechanisms [ChIP-seq]	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	16	BIGWIG NARROWPEAK	Shiming Chen	Nov 08, 2023
GSE223659	Missense mutations in CRX homeodomain cause dominant retinopathies through two distinct mechanisms	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus synthetic construct	68	BIGWIG NARROWPEAK	Shiming Chen	Nov 08, 2023
GSE262282	METTL3 restricts RIPK1-dependent cell death via the ATF3-cFLIP axis in the intestinal epithelium	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	9	BIGWIG CSV	Ye-guang Chen	Sep 05, 2024
GSE213049	Prolyl endopeptidase-mediated transcriptional regulation in quiescent and activated bone marrow-derived macrophages (CUT&Tag)	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	3	BIGWIG	Yuanwen Chen	Aug 09, 2023
GSE213051	Prolyl endopeptidase-mediated transcriptional regulation in quiescent and activated bone marrow-derived macrophages	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	21	BIGWIG	Yuanwen Chen	Aug 09, 2023
GSE234680	THAP1 is a master regulator of zinc finger transcription factors guiding gastrulation of murine embryos	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus Rattus norvegicus	53	BIGWIG CLOUPE TAB TXT	Fubo Cheng	Aug 01, 2024
GSE236376	THAP1 is a master regulator of zinc finger transcription factors guiding gastrulation of murine embryos [ChIP-seq(mESC)]	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	15	BIGWIG	Fubo Cheng	Aug 01, 2024
GSE110061	Direct DNA crosslinking with CAP-C uncovers transcription-dependent chromatin organization at high resolution	Genome binding/occupancy profiling by high throughput sequencing Other	Drosophila melanogaster Homo sapiens Mus musculus	76	BIGWIG HIC NARROWPEAK TXT SRA Run Selector	Youzhi Cheng	Aug 22, 2020