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2876 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter	Platform: GPL19057	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus
GSE202585	Genome-wide screening identifies Trim33 as an essential regulator of dendritic cell differentiation	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	unidentified plasmid Mus musculus	38	BW	Ioanna Tiniakou	Apr 12, 2024
GSE194018	A role for the GATA transcription factor family in X-chromosome inactivation as direct potent Xist activators	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Synthetic plasmid Mus musculus	39	BW NARROWPEAK	Till Schwämmle	Jan 26, 2022
GSE109262	Joint profiling of chromatin accessibility, DNA methylation and transcription in single cells	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	synthetic construct Mus musculus	244	TSV TXT SRA Run Selector	Felix Krueger	Jan 17, 2018
GSE157139	CRISPR and biochemical screens identify MAZ as a co-factor in CTCF-mediated insulation at Hox clusters	Expression profiling by high throughput sequencing Other Genome binding/occupancy profiling by high throughput sequencing	synthetic construct Mus musculus	138	BEDGRAPH BW HIC NARROWPEAK TXT	Danny Reinberg	Feb 06, 2022
GSE167358	Distal and proximal cis-regulatory elements sense X-dosage and developmental state at the Xist locus	Genome binding/occupancy profiling by high throughput sequencing	synthetic construct Mus musculus	164	BW HIC NARROWPEAK	Till Schwämmle	Mar 04, 2021
GSE215065	Regulation of mouse chamber selective enhancers	Genome binding/occupancy profiling by high throughput sequencing Other Expression profiling by high throughput sequencing	synthetic construct Mus musculus	82	BW TXT	Xiaoran Zhang	Jan 30, 2023
GSE216095	Targeting MYC effector functions in pancreatic cancer by inhibiting the ATPase RUVBL1/2	Genome binding/occupancy profiling by high throughput sequencing Other Expression profiling by high throughput sequencing	synthetic construct Mus musculus	87	BEDGRAPH	Elmar Wolf	Jun 01, 2024
GSE218472	Enhancer grammar of liver cell types and hepatocyte zonation states	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	synthetic construct Mus musculus Homo sapiens	79	BW TSV	Carmen Bravo Gonzalez-Blas	Sep 07, 2023
GSE142238	Cross-species analysis of melanoma enhancer logic using deep learning	Genome binding/occupancy profiling by high throughput sequencing	Sus scrofa domesticus Mus musculus Homo sapiens Equus caballus Danio rerio Canis lupus familiaris	23	BW SRA Run Selector	Stein Aerts	Apr 22, 2020
GSE132146	Single cell RNA-seq analysis reveals the crucial role of Collagen triple helix repeat containing 1 (Cthrc1) cardiac fibroblasts for ventricular remodeling after myocardial infarction	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Sus scrofa Mus musculus Homo sapiens	202	BW H5	Silvia C Hernandez	Sep 29, 2020
GSE129380	An evolutionarily conserved function of polycomb silences the MHC class I antigen presentation pathway and enables immune evasion in cancer [ChIP-Seq]	Genome binding/occupancy profiling by high throughput sequencing	Sarcophilus harrisii Mus musculus Homo sapiens	24	BROADPEAK NARROWPEAK SRA Run Selector	Mark Dawson	Sep 28, 2019
GSE129382	An evolutionarily conserved function of polycomb silences the MHC class I antigen presentation pathway and enables immune evasion in cancer	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Sarcophilus harrisii Mus musculus Homo sapiens	54	BROADPEAK NARROWPEAK	Mark Dawson	Sep 28, 2019
GSE108948	Fine Resolution Mapping of TF binding and Chromatin Interactions	Genome binding/occupancy profiling by high throughput sequencing	Saccharomyces cerevisiae Mus musculus	12	BW CSV SRA Run Selector	Nir Friedman	Mar 06, 2018
GSE115693	DNA accessibility is not the primary determinant of chromatin-mediated gene regulation	Genome binding/occupancy profiling by high throughput sequencing	Saccharomyces cerevisiae Mus musculus	98	BW	Razvan V. Chereji	Aug 27, 2019
GSE187007	G4access identifies G-quadruplexes and their associations with open chromatin and imprinting control regions. Nat Genet (2023). https://doi.org/10.1038/s41588-023-01437-4	Genome binding/occupancy profiling by high throughput sequencing Other Expression profiling by high throughput sequencing	Saccharomyces cerevisiae Mus musculus Homo sapiens Drosophila melanogaster	63	BED WIG SRA Run Selector	Amal Makrini	Apr 14, 2023
GSE207793	The AT-hook is an evolutionarily conserved auto-regulatory domain of SWI/SNF required for cell lineage priming	Other Genome binding/occupancy profiling by high throughput sequencing	Saccharomyces cerevisiae Mus musculus	100	BW TAB WIG	Junwoo Lee	Jun 01, 2023
GSE222040	Synthetic reversed sequence reveals default chromatin states	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Saccharomyces cerevisiae Mus musculus	112	BW NARROWPEAK	Brendan R. Camellato	Dec 30, 2023
GSE252482	Synthetic reversed sequences reveal default genomic states	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Saccharomyces cerevisiae Mus musculus	160	BW NARROWPEAK	Brendan R. Camellato	Jan 16, 2024
GSE155658	Postnatal development of Cardiomyocyte	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Rattus rattus Mus musculus	115	BEDGRAPH TXT XLSX SRA Run Selector	Li Wang	May 29, 2022
GSE78688	Activity-dependent transcriptional changes in human neurons	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Rattus norvegicus Mus musculus Homo sapiens	43	BW SRA Run Selector	Bulent Ataman	Nov 02, 2016