GEO Browser - GEO

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203 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter	Platform: GPL19057	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus		BEDGRAPH
GSE72856	Intragenic DNA methylation prevents cryptic transcription initiations on gene bodies	Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	78	BED BEDGRAPH	Francesco Neri	Feb 25, 2017
GSE76934	Reversible transitions between transformed and differentiated states in AML	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	53	BED BEDGRAPH TXT	Ruijie Liu	May 13, 2019
GSE79520	The dual role of LSD1 and HDAC3 in STAT5-dependent transcription is determined by protein interactions, binding affinities, motifs and genomic positions.	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	40	BED BEDGRAPH TXT	Aikaterini Nanou	Nov 30, 2016
GSE81222	Erasure of Tet-oxidized 5-methylcytosine by a SRAP nuclease	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	31	BED BEDGRAPH BIGWIG TXT WIG SRA Run Selector	Douglas Edmund Feldman	Oct 10, 2017
GSE90561	Sox2 is required for functional chromatin connectivity in brain-derived neural stem cells.	Other Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	65	BED BEDGRAPH BEDPE TXT	Federico Zambelli	Mar 07, 2019
GSE98119	The energetics and physiological impact of cohesin extrusion	Other Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	352	BED BEDGRAPH BW HIC NARROWPEAK TXT SRA Run Selector	Seolkyoung Jung	May 01, 2018
GSE104257	Loss of KDM4B Exacerbates Bone-Fat Imbalance and Mesenchymal Stem Cell Exhaustion in Skeletal Aging [ChIP-seq]	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	8	BED BEDGRAPH SRA Run Selector	Cunyu Wang	Feb 10, 2021
GSE104259	Loss of KDM4B exacerbates bone-fat imbalance and mesenchymal stromal cell exhaustion in skeletal aging	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	12	BED BEDGRAPH	Cunyu Wang	Feb 10, 2021
GSE108944	ATAC-seq time course in mouse acute myeloid leukemia cells upon PU.1 restoration and knockdown	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	8	BED BEDGRAPH SRA Run Selector	Ruijie Liu	May 13, 2019
GSE108945	PU.1 ChIP-seq time course in mouse acute myeloid leukemia cells upon PU.1 restoration and knockdown	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	8	BED BEDGRAPH SRA Run Selector	Ruijie Liu	May 13, 2019
GSE111009	Cell type-dependent control of enhancer and p53 transcriptional activity by p63	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	98	BED BEDGRAPH BW NARROWPEAK TXT SRA Run Selector	Morgan A Sammons	Feb 11, 2019
GSE112110	Genome wide map of DMC1 in testis of Stag3-/-, Rec8-/- and Stag3-/-Rec8-/- mice.	Genome binding/occupancy profiling by high throughput sequencing Third-party reanalysis	Mus musculus	14	BED BEDGRAPH TXT SRA Run Selector	Mary Ann Handel	Mar 07, 2019
GSE112957	Parvovirus Minute Virus of Mice Localizes to Sites of Cellular DNA Damage to Establish and Amplify its Lytic Infection	Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	23	BED BEDGRAPH SRA Run Selector	Kinjal Majumder	Jul 25, 2018
GSE123877	Enhancer Profiling Reveals Regulators of Skeletal Muscle Identity and Reprogramming [ChIP-seq, ATAC-seq]	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	62	BED BEDGRAPH TXT SRA Run Selector	Grant D. Barish	Sep 10, 2019
GSE124596	A conserved noncoding locus modulates random monoallelic Xist expression across a TAD boundary	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	56	BED BEDGRAPH BW CSV TXT SRA Run Selector	Nicolas Servant	Dec 01, 2019
GSE125340	Specificity of enhancer selection by IRF3, IRF5 and IRF9 in dendritic cells	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	8	BED BEDGRAPH SRA Run Selector	Lajos Széles	Jul 31, 2019
GSE129997	Re-configuration of Chromatin Structure During the Mitosis-G1 Phase Progression	Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	75	BED BEDGRAPH BW NARROWPEAK TSV SRA Run Selector	Gerd A Blobel	Nov 27, 2019
GSE134796	Nucleosomes protect DNA from irradiation-induced double strand breaks in living cells (ATAC-seq)	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	2	BED BEDGRAPH NARROWPEAK SRA Run Selector	Jose Manuel Garcia-Manteiga	Jul 07, 2020
GSE134798	Nucleosomes protect DNA from irradiation-induced double strand breaks in living cells	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing Other	Homo sapiens Mus musculus	34	BED BEDGRAPH NARROWPEAK	Jose Manuel Garcia-Manteiga	Jul 07, 2020
GSE135896	HELLS and PRDM9 from a pioneer complex to open chromatin at meiotic recombination hotspots	Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	51	BED BEDGRAPH TSV SRA Run Selector	Christopher Lee Baker	Dec 17, 2019