GEO Browser - GEO

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595 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter	Platform: GPL19057	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus		BED
GSE199431	Position-dependent function of human sequence-specific transcription factors	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Chlorocebus sabaeus Homo sapiens Mus musculus	56	BED FA TSV TXT	Christopher Benner	Apr 26, 2024
GSE250267	EVOLUTIONARY CO-OPTION OF AN ANCESTRAL CLOACAL REGULATORY LANDSCAPE WITH THE EMERGENCE OF DIGITS AND GENITALS	Genome binding/occupancy profiling by high throughput sequencing Other Expression profiling by high throughput sequencing	Danio rerio Mus musculus	34	BED BW COOL NARROWPEAK TXT	Aurelie Hintermann	Apr 17, 2024
GSE187007	G4access identifies G-quadruplexes and their associations with open chromatin and imprinting control regions. Nat Genet (2023). https://doi.org/10.1038/s41588-023-01437-4	Genome binding/occupancy profiling by high throughput sequencing Other Expression profiling by high throughput sequencing	Drosophila melanogaster Homo sapiens Mus musculus Saccharomyces cerevisiae	63	BED WIG SRA Run Selector	Amal Makrini	Apr 14, 2023
GSE199801	A CpG island-encoded mechanism protects genes from premature transcription termination [SET1_ChIPseq]	Genome binding/occupancy profiling by high throughput sequencing	Drosophila melanogaster Homo sapiens Mus musculus	60	BED BW CSV	Emilia Dimitrova	Dec 22, 2022
GSE128818	Aberrant phase separation of transcription factors in human developmental disorders	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Third-party reanalysis	Gallus gallus Mus musculus	19	BED BW MTX TSV SRA Run Selector	Denes Hnisz	May 07, 2020
GSE195592	Developmental and evolutionary comparative analysis of a HoxD regulatory landscape in mammals and birds	Genome binding/occupancy profiling by high throughput sequencing Other	Gallus gallus Mus musculus	46	BED BEDGRAPH BIGWIG BW COOL NARROWPEAK TXT	Aurelie Hintermann	Jun 20, 2022
GSE203031	Developmental and evolutionary comparative analysis of a HoxD regulatory landscape in mammals and birds [ATAC-Seq]	Genome binding/occupancy profiling by high throughput sequencing	Gallus gallus Mus musculus	12	BED BEDGRAPH BIGWIG NARROWPEAK	Aurelie Hintermann	Jun 20, 2022
GSE65360	Single-cell chromatin accessibility data using scATAC-seq	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	1632	BED SRA Run Selector	Jason Daniel Buenrostro	Jun 17, 2015
GSE73865	Genome-wide map of SIX2 and SIX1 binding in human embryonic kidney cortex	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	21	BED WIG SRA Run Selector	Andrew P McMahon	Jan 31, 2016
GSE73867	Nephron endowment	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	23	BED TXT WIG	Andrew P McMahon	Jan 31, 2016
GSE86912	Quantitative Proteomic and Transcriptomic Analysis Reveals Post-Transcriptional Regulation of Mitochondrial Biogenesis during Erythropoiesis	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	32	BED WIG	Jian Xu	May 15, 2017
GSE88817	In situ CAPTURE of chromatin interactions by biotinylated dCas9	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens Mus musculus	175	BED WIG	Jian Xu	Aug 24, 2017
GSE89416	ATAC-seq analysis in 5F cells and AGM cells with EZH1 depletion	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	7	BED WIG SRA Run Selector	Melissa Kinney	Jan 01, 2018
GSE89418	EZH1 as a key epigenetic barrier to definitive haematopoiesis during embryonic development	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	58	BED TXT WIG	Melissa Kinney	Jan 01, 2018
GSE98119	The energetics and physiological impact of cohesin extrusion	Other Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	352	BED BEDGRAPH BW HIC NARROWPEAK TXT SRA Run Selector	Seolkyoung Jung	May 01, 2018
GSE98843	Epigenome analysis reveals novel aspects of ILC2 activation and supports a pathogenic role in asthma	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	15	BED TXT SRA Run Selector	Ralph Stadhouders	Mar 14, 2018
GSE99173	ATAC-seq analysis in K562 cells with or without HBD-1k region knockout, mouse KH2 embryonic stem cells (ESCs) and differentiated KH2 Embryoid bodies (EBs)	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	14	BED WIG SRA Run Selector	Jian Xu	Aug 24, 2017
GSE99177	ChIP-seq analysis of dCas9 chromatin occupancy by dCas9/sgRNA-mediated CAPTURE	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	61	BED TXT WIG SRA Run Selector	Jian Xu	Aug 24, 2017
GSE99178	ChIP-seq analysis of BRD4 and RNAPII in K562 cells treated with DMSO or JQ1, NUP98 and NUP153 in K562 cells, and H3K27ac in mouse KH2 undifferentiated embryonic stem cells (ESCs) or differentiated embryonic bodies (EBs)	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	11	BED WIG SRA Run Selector	Jian Xu	Aug 24, 2017
GSE103602	Genome-wide H3K4me3 and gene expression before and after methionine restriction in human cancer cells and mouse liver	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	28	BED TXT SRA Run Selector	Jason W Locasale	Jan 01, 2018