GEO Browser - GEO

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253 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Genome binding/occupancy profiling by high throughput sequencing			TBI
GSE116581	fruitENCODE: An encyclopedia of DNA elements for fruit ripening	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Arabidopsis thaliana Carica papaya Citrullus lanatus Cucumis melo Cucumis sativus Fragaria vesca Malus domestica Musa acuminata AAA Group Oryza sativa Prunus persica Pyrus x bretschneideri Solanum lycopersicum Vitis vinifera	282	BW NARROWPEAK TBI TXT SRA Run Selector	Silin Zhong	Jul 04, 2018
GSE142366	Dynamic transcriptional responses to injury of regenerative and non-regenerative cardiomyocytes revealed by single-nucleus RNA sequencing	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus Rattus norvegicus	18	BED CSV H5 MTX TBI TSV	Zhaoning Wang	Mar 18, 2020
GSE145619	Combinatorial transcription factor activities on open chromatin induce embryonic heterogeneity in vertebrates	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Xenopus tropicalis	132	BED TAB TBI TSV SRA Run Selector	Ann Rose Bright	Dec 18, 2020
GSE148981	An Integrated Epigenomic and Transcriptomic Map of Mouse and Human ab T Cell Development	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	78	BW CSV H5 TAB TBI TSV TXT	Remy Bosselut	Nov 25, 2020
GSE149622	Skin-resident innate lymphoid cells converge on a pathogenic effector state	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	7	BED FA MTX TBI TSV SRA Run Selector	Elena Torlai Triglia	Dec 14, 2020
GSE152607	Emergence of a high-plasticity cell state during lung cancer evolution	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	7452	H5 TBI TSV	Matan Hofree	Jul 24, 2020
GSE157691	Gain-of-function MUC5B Promoter Variant, Strongly Linked to Idiopathic Pulmonary Fibrosis, Defines an Epigenetically Poised Enhancer	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens	24	BED BEDGRAPH MTX TBI TSV	Sarah Sasse	Dec 29, 2020
GSE158205	Differential chromatin binding of the lung lineage transcription factor NKX2-1 resolves opposing murine alveolar cell fates in vivo	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	78	BED BEDGRAPH BROADPEAK CLOUPE CSV H5 NARROWPEAK TBI TSV	Danielle R. Little	Mar 08, 2021
GSE161132	Decoding Cortical Glial Cell Development	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	2	CSV H5 MTX TBI TSV SRA Run Selector	Guoping Liu	Feb 05, 2021
GSE161685	The IPF-associated variant in MUC5B, rs35705950, resides within an enhancer that is subject to lineage- and disease-dependent epigenetic remodeling	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	8	BED MTX RDS TBI TSV	Sarah Sasse	Dec 29, 2020
GSE162662	Epigenetic traits inscribed in chromatin accessibility in aged hematopoietic stem cells	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	123	BW CSV H5 NARROWPEAK TBI TSV TXT	Atsushi Iwama	Dec 05, 2020
GSE162798	Simple oligonucleotide-based multiplexing of single-cell chromatin accessibility	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	15	BED CSV MTX TBI TSV TXT SRA Run Selector	Anil K Sood	Oct 20, 2021
GSE164716	H3K27me3 conditions chemotolerance in triple-negative breast cancer	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	100	BW MTX TBI TSV VCF	Céline Vallot	Feb 15, 2022
GSE165714	Chromatin Regulation by TFAP2A	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens	27	BW H5 NARROWPEAK TBI TSV	Anthony Oro	Feb 24, 2023
GSE168408	Human prefrontal cortex gene regulatory dynamics from gestation to adulthood at single-cell resolution	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	49	CSV H5 TBI TSV SRA Run Selector	Ryan Lister	Oct 31, 2022
GSE169431	Transcriptional Activation of Regenerative Haematopoiesis via Niche Sensing	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus Mus musculus	42	H5 NARROWPEAK TBI TSV	Tomer Itkin	Apr 01, 2024
GSE172116	Epigenomic analysis reveals a dynamic and context-specific macrophage enhancer landscape associated with innate immune activation and tolerance	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	99	BEDGRAPH BW TBI SRA Run Selector	Ping Zhang	Jun 01, 2022
GSE174376	A single-cell/nucleus atlas of pediatric rhabdomyosarcoma	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens	64	BED MTX TBI TSV TXT SRA Run Selector	Michael Dyer	Apr 06, 2022
GSE179043	Transcriptional programs dictating Schwann cell transformation in MPNST	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	50	CSV H5 TAR TBI TSV TXT	Lai Man (Natalie) Wu	Nov 07, 2022
GSE180589	Single cell functional genomics reveals plasticity of subcutaneous white adipose tissue (WAT) during early postnatal development	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	32	CSV H5 MTX TBI TSV TXT SRA Run Selector	James G. Granneman	Sep 08, 2021