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253 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Genome binding/occupancy profiling by high throughput sequencing			TBI
GSE142365	Single cell ATAC-seq of cardiomyocytes from neonatal mouse hearts after injury	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	1	BED CSV H5 MTX TBI TSV SRA Run Selector	Zhaoning Wang	Mar 18, 2020
GSE158196	Differential chromatin binding of the lung lineage transcription factor NKX2-1 resolves opposing murine alveolar cell fates in vivo [scATAC-Seq]	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	1	BED BEDGRAPH BROADPEAK CLOUPE CSV H5 TBI TSV SRA Run Selector	Danielle R. Little	Mar 08, 2021
GSE190054	FoxP3 associates with enhancer-promoter loops to regulate Treg-specific gene expression [ATAC-seq]	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	1	BED MTX TBI TSV TXT SRA Run Selector	CBDM Lab	Dec 07, 2021
GSE205065	A novel lineage of RORγt+ antigen presenting cells instructs microbiota-dependent regulatory T cell differentiation and tolerance during early life [multiome scATAC-seq]	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	1	TBI TSV	Chrysothemis Brown	Sep 06, 2022
GSE230657	Highly efficient and rapid generation of human pluripotent stem cells by chemical reprogramming (scATAC-seq)	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	1	TBI TSV	Yulin Lyu	Apr 26, 2023
GSE237198	Mutations from IPEX patients elicit a range of phenotypes in mice [scATAC-Seq]	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	1	MTX TBI TSV TXT	CBDM Lab	Oct 20, 2023
GSE240657	Homeostatic, repertoire and transcriptional relationships between colon T regulatory cell subsets	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	1	MTX TBI TSV TXT	CBDM Lab	Dec 20, 2023
GSE245836	CD38+ Alveolar Macrophages mediate early control of M.tuberculosis proliferation in the lung [scATAC-seq]	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	1	TBI TSV	Davide Pisu	Oct 31, 2023
GSE255406	Single cell approaches define two mammalian oligodendrocyte precursor cell populations and their evolution over developmental time [scMultiome-seq]	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	1	H5 TBI TSV	Freda Miller	Mar 05, 2024
GSE151408	Erythrophagocytosis drives anti-inflammatory programming of liver macrophages (ATAC-seq)	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	2	CSV H5 RDS TBI TSV SRA Run Selector	Marc Pfefferle	Aug 13, 2020
GSE154965	Emergence of a high-plasticity cell state during lung cancer evolution, single-cell ATACseq	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	2	H5 TBI TSV SRA Run Selector	Matan Hofree	Jul 24, 2020
GSE161132	Decoding Cortical Glial Cell Development	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	2	CSV H5 MTX TBI TSV SRA Run Selector	Guoping Liu	Feb 05, 2021
GSE186291	Single-cell ATAC of WT thymic IEL precursors (IELp)	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	2	CSV H5 TBI TSV SRA Run Selector	Jia Nie	Mar 30, 2022
GSE189210	Parallel single cell multi-omics analysis of neonatal skin reveals transitional fibroblast states that restrict differentiation into distinct fates	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	2	BED CSV H5 MTX TBI TSV SRA Run Selector	Sean Thompson	Nov 24, 2021
GSE190162	CREBBP/EP300 acetyltransferase inhibition targets lineage specific enhancers to inhibit the proliferation of ER+ breast cancer cells [scATAC-Seq]	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	2	BED MTX TBI TSV SRA Run Selector	David Mayhew	Mar 04, 2022
GSE190424	Epigenetic traits inscribed in chromatin accessibility in aged hematopoietic stem cells (single cell ATAC-seq)	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	2	CSV H5 TBI TSV SRA Run Selector	Atsushi Iwama	Dec 08, 2021
GSE192856	Single-cell ATAC-seq analysis of hESCs undergoing neuronal differentiation [scATAC-seq]	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	2	CSV H5 TBI TSV	Ragnhild Eskeland	Oct 13, 2022
GSE199556	Longitudinal single cell transcriptional and epigenetic mapping of effector, memory, and exhausted CD8 T cells reveals shared biological circuits across distinct cell fates [scATAC-Seq 1]	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	2	BED CSV H5 TBI TSV	E JOHN WHERRY	Oct 31, 2022
GSE204863	Single-cell ATAC-Seq (scATAC-Seq) of mouse basal cell carcinoma (BCC) immune cells.	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	2	TBI TSV	Anthony Oro	Mar 29, 2023
GSE208039	Transcriptional Activation of Regenerative Haematopoiesis via Niche Sensing [snRNA/ATACseq HSPC Multiome]	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus	2	H5 TBI TSV	Tomer Itkin	Apr 01, 2024