GEO Browser - GEO

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235 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Genome binding/occupancy profiling by high throughput sequencing			TBI
GSE116581	fruitENCODE: An encyclopedia of DNA elements for fruit ripening	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Arabidopsis thaliana Carica papaya Citrullus lanatus Cucumis melo Cucumis sativus Fragaria vesca Malus domestica Musa acuminata AAA Group Oryza sativa Prunus persica Pyrus x bretschneideri Solanum lycopersicum Vitis vinifera	282	BW NARROWPEAK TBI TXT SRA Run Selector	Silin Zhong	Jul 04, 2018
GSE123576	High-throughput combinatorial indexing enables scalable single-cell chromatin accessibility profiling [mouse brain]	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	12	BED CSV TBI TSV XLSX SRA Run Selector	Caleb Lareau	May 02, 2019
GSE123577	High-throughput combinatorial indexing enables scalable single-cell chromatin accessibility profiling [PBMC]	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	6	BED CSV TBI TSV XLSX SRA Run Selector	Caleb Lareau	May 02, 2019
GSE123578	High-throughput combinatorial indexing enables scalable single-cell chromatin accessibility profiling [Blood]	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	28	BED CSV TBI TSV XLSX SRA Run Selector	Caleb Lareau	May 02, 2019
GSE123580	High-throughput combinatorial indexing enables scalable single-cell chromatin accessibility profiling [Bone marrow]	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	16	BED CSV TBI TSV XLSX SRA Run Selector	Caleb Lareau	May 02, 2019
GSE123581	Droplet-based combinatorial indexing for massive-scale single-cell chromatin accessibility	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	82	CSV TBI TSV	Caleb Lareau	May 02, 2019
GSE141538	Zygotic pioneer factor activity of Odd-paired/Zic is necessary for establishing the Drosophila Segmentation Network	Genome binding/occupancy profiling by high throughput sequencing	Drosophila melanogaster	51	BED BEDGRAPH TBI TXT WIG SRA Run Selector	Shelby A Blythe	Feb 01, 2020
GSE142365	Single cell ATAC-seq of cardiomyocytes from neonatal mouse hearts after injury	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	1	BED CSV H5 MTX TBI TSV SRA Run Selector	Zhaoning Wang	Mar 18, 2020
GSE142366	Dynamic transcriptional responses to injury of regenerative and non-regenerative cardiomyocytes revealed by single-nucleus RNA sequencing	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus Rattus norvegicus	18	BED CSV H5 MTX TBI TSV	Zhaoning Wang	Mar 18, 2020
GSE152607	Emergence of a high-plasticity cell state during lung cancer evolution	Genome binding/occupancy profiling by high throughput sequencing Other Expression profiling by high throughput sequencing	Mus musculus	7452	H5 TBI TSV	Matan Hofree	Jul 24, 2020
GSE154965	Emergence of a high-plasticity cell state during lung cancer evolution, single-cell ATACseq	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	2	H5 TBI TSV SRA Run Selector	Matan Hofree	Jul 24, 2020
GSE151408	Erythrophagocytosis drives anti-inflammatory programming of liver macrophages (ATAC-seq)	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	2	CSV H5 RDS TBI TSV SRA Run Selector	Marc Pfefferle	Aug 13, 2020
GSE148979	An Integrated Epigenomic and Transcriptomic Map of Mouse and Human ab T Cell Development (Mouse scATACseq)	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	4	CSV H5 TBI TSV SRA Run Selector	Remy Bosselut	Nov 25, 2020
GSE148980	An Integrated Epigenomic and Transcriptomic Map of Mouse and Human ab T Cell Development (Human scATACseq)	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	3	CSV H5 TBI TSV SRA Run Selector	Remy Bosselut	Nov 25, 2020
GSE148981	An Integrated Epigenomic and Transcriptomic Map of Mouse and Human ab T Cell Development	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	78	BW CSV H5 TAB TBI TSV TXT	Remy Bosselut	Nov 25, 2020
GSE162662	Epigenetic traits inscribed in chromatin accessibility in aged hematopoietic stem cells	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	123	BW CSV H5 NARROWPEAK TBI TSV TXT	Atsushi Iwama	Dec 05, 2020
GSE153479	Single cell ATAC-seq of neonatal heart regeneration	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	4	BED CSV H5 MTX TBI TSV TXT SRA Run Selector	Zhaoning Wang	Dec 08, 2020
GSE149622	Skin-resident innate lymphoid cells converge on a pathogenic effector state	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	7	BED FA MTX TBI TSV SRA Run Selector	Elena Torlai Triglia	Dec 14, 2020
GSE145619	Combinatorial transcription factor activities on open chromatin induce embryonic heterogeneity in vertebrates	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Xenopus tropicalis	132	BED TAB TBI TSV SRA Run Selector	Ann Rose Bright	Dec 18, 2020
GSE157691	Gain-of-function MUC5B Promoter Variant, Strongly Linked to Idiopathic Pulmonary Fibrosis, Defines an Epigenetically Poised Enhancer	Genome binding/occupancy profiling by high throughput sequencing Other Expression profiling by high throughput sequencing	Homo sapiens	24	BED BEDGRAPH MTX TBI TSV	Sarah Sasse	Dec 29, 2020