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Accession	Title	Series type(s)	Organism(s)	Samples	GDS	Supplementary	Contact	Release date
Filter		Genome binding/occupancy profiling by high throughput sequencing				SRA Run Selector	Ramesh Shivdasani
GSE62909	SOX15 governs a transcriptional program in human esophageal stratified epithelium and in a subset of esophageal adenocarcinomas	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	6		BED DIFF FPKM_TRACKING WIG SRA Run Selector	Ramesh Shivdasani	Nov 09, 2015
GSE70766	Distinct processes and transcriptional targets underlie CDX2 requirements in intestinal stem cells and differentiated villus cells	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	11		BED BW GTF TXT SRA Run Selector	Ramesh Shivdasani	Sep 15, 2015
GSE97178	Hybrid stomach-intestinal chromatin states underlie human Barrett’s metaplasia	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	40		BED BW MTX TSV SRA Run Selector	Ramesh Shivdasani	Jun 03, 2021
GSE71713	Acquired tissue-specific promoter bivalency is a basis for PRC2 necessity in adult somatic cells	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	23		BIGWIG BW TXT SRA Run Selector	Ramesh Shivdasani	May 20, 2016
GSE73398	Fixed tissue ChIP-Seq (FiT-Seq) of archived clinical samples reveals chromatin dynamics and tumor-specific enhancer profiles	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	109		BW FPKM_TRACKING SRA Run Selector	Ramesh Shivdasani	Apr 25, 2016
GSE83394	Dynamic Reorganization of Chromatin Accessibility Signatures during Dedifferentiation of Secretory Precursors into Lgr5+ Intestinal Stem Cells	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	49		BW TXT SRA Run Selector	Ramesh Shivdasani	Jun 01, 2017
GSE98724	Transcription factor-dependent ‘anti-repressive’ mammalian enhancers exclude H3K27me3 from extended genomic domains	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	47		BW TXT SRA Run Selector	Ramesh Shivdasani	Jan 11, 2018
GSE111024	Extensive recovery of embryonic enhancer and gene memory stored in hypomethylated enhancer DNA.	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	52		BW TXT SRA Run Selector	Ramesh Shivdasani	Mar 14, 2019
GSE128671	Replicational dilution of H3K27me3 in mammalian cells and the role of poised promoters	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	47		BW MTX TSV TXT SRA Run Selector	Ramesh Shivdasani	Jan 17, 2020
GSE130822	Ascl2-dependent cell differentiation drives regeneration of abated intestinal stem cells	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	19		BW MTX TSV TXT SRA Run Selector	Ramesh Shivdasani	Jan 17, 2020
GSE131265	Krüppel-like Factor 5 Regulates Stemness, Lineage Specification, and Regeneration of Intestinal Epithelial Stem Cells	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	5		BW SRA Run Selector	Ramesh Shivdasani	Oct 27, 2021
GSE132379	Creb5 establishes the competence for Prg4 expression in articular cartilage	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Bos taurus	8		BW TXT SRA Run Selector	Ramesh Shivdasani	Mar 16, 2021
GSE160264	Transcription factor-mediated intestinal metaplasia and the role of a shadow enhancer	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	44		BW CSV SRA Run Selector	Ramesh Shivdasani	Feb 21, 2022
GSE183299	Cell and chromatin transitions in intestinal stem cell regeneration	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	22		BW ZIP SRA Run Selector	Ramesh Shivdasani	Jun 07, 2022
GSE115541	Chromatin and tissue plasticity precede commitment to intestinal differentiation during endoderm development	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	74		TXT SRA Run Selector	Ramesh Shivdasani	Oct 26, 2018