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54 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Genome binding/occupancy profiling by high throughput sequencing			RESULTS
GSE201681	Dissecting genetic components associated with eye disease using integrative genomic analysis	Genome binding/occupancy profiling by high throughput sequencing Other Expression profiling by high throughput sequencing	Homo sapiens	24	BW RESULTS	Kirsty Jamieson	Apr 30, 2022
GSE240506	Histone lysine demethylase 4 family proteins maintain the transcriptional program and adrenergic cellular state of MYCN-amplified neuroblastoma	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	26	NARROWPEAK RESULTS	Hongjian Jin	Mar 02, 2024
GSE241561	SRF transcriptionally regulates the oligodendrocyte cytoskeleton during CNS myelination	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus Rattus norvegicus	33	BIGWIG MTX NARROWPEAK RESULTS TSV	Fabian Michael Kern	Feb 23, 2024
GSE185884	Three-dimensional analysis of genome organization in CTCF-WT and CTCF-KO dendritic cells	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	92	BED BW HIC RESULTS	Hyoung-Pyo Kim	Jan 04, 2023
GSE227664	Genome-wide transcriptional, epigenetic, and topological changes occurring in human natural killer cells in response to HDAC inhibitor	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens	27	BED BW HIC RESULTS	Hyoung-Pyo Kim	Jun 02, 2023
GSE241927	Dissection of a CTCF topological boundary uncovers principles of enhancer-oncogene regulation	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens	65	BW HIC RESULTS	Kyung Lock Kim	Mar 06, 2024
GSE244255	CRISPR screening in human trophoblast stem cells reveals both shared and distinct aspects of human and mouse placental development	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens	65	BW RESULTS	Eri H Kobayashi	Nov 10, 2023
GSE198434	Genomic and epigenomic responses to aspirin in human colonic organoids	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	12	NARROWPEAK RESULTS	Sonia S Kupfer	Jan 01, 2023
GSE240246	Genome-Wide Characterization of TAZ Binding Sites in Mammary Epithelial Cells	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	24	RESULTS	Tao Liu	Oct 16, 2023
GSE231556	Pyruvate dehydrogenase complex integrates the metabolome and epigenome in memory CD8+ T cell differentiation in vitro	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	37	BEDGRAPH BROADPEAK BW NARROWPEAK RESULTS	Peter McGuire	Aug 07, 2023
GSE173860	The Polycomb protein RING1B enables estrogen-mediated gene expression by promoting enhancer-promoter interaction and R-loop formation	Genome binding/occupancy profiling by high throughput sequencing Other Expression profiling by high throughput sequencing	Homo sapiens	76	BIGWIG BW RESULTS TXT SRA Run Selector	Lluis Morey	Sep 29, 2021
GSE162194	Cohesin-dependent chromosome loop extrusion is limited by transcription and stalled replication forks	Genome binding/occupancy profiling by high throughput sequencing Other Expression profiling by high throughput sequencing	Saccharomyces cerevisiae	50	BW HIC RESULTS	Ryuichiro Nakato	Jun 15, 2022
GSE190656	Aberrant EVI1 splicing contributes to EVI1-rearranged leukemia	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	19	RESULTS TXT	Masaki Nomura	Jun 21, 2022
GSE203322	BRD9 determines the cell fate of hematopoietic stem cells by regulating chromatin state	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	60	BIGWIG BW MTX RESULTS TSV TXT	Masaki Nomura	Oct 31, 2023
GSE252653	Short-chain fatty acids propionate and butyrate control growth and differentiation linked to cellular metabolism	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	67	NARROWPEAK RESULTS	Michael Nshanian	Jan 10, 2024
GSE199788	Enhancer remodeling drives MLL oncogene-dependent transcriptional dysregulation in leukemia stem cells	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	37	BW RESULTS	Feng Pan	Feb 07, 2023
GSE193393	PHF20 Activates Autophagy Genes through Enhancer Activation via H3K36me2 Binding Activity	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	28	BIGWIG RESULTS	Se Won Park	Jun 23, 2022
GSE172613	Phenotypic heterogeneity driven by plasticity of the intermediate EMT state governs disease progression and metastasis in breast cancer	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens	35	BW NARROWPEAK RESULTS	Diwakar Pattabiraman Pattabiraman	Feb 15, 2022
GSE207773	Therapeutic induction of mesenchymal-epithelial transition via epigenetic reprogramming curtails metastatic progression and sensitizes breast cancers to treatment	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	39	RESULTS	Diwakar Pattabiraman Pattabiraman	Aug 02, 2023
GSE243765	Mechanoresponsive genomic enhancers potentiate the cellular response to matrix stiffness	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens	63	COUNTS NARROWPEAK RESULTS TAR TXT	Timothy E Reddy	Jan 31, 2024