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67 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Genome binding/occupancy profiling by high throughput sequencing			PAIR
GSE49847	A comparative encyclopedia of DNA elements in the mouse genome	Expression profiling by high throughput sequencing Genome variation profiling by genome tiling array Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	588	BAM BEDRNAELEMENTS BIGWIG BROADPEAK NARROWPEAK PAIR	ENCODE DCC	Aug 14, 2013
GSE51003	A genome-wide analysis of open chromatin in human epididymis epithelial cells reveals novel candidate regulatory elements for male infertility	Expression profiling by array Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	5	PAIR	Ann Harris	Sep 19, 2013
GSE52181	A genome-wide analysis of open chromatin in human tracheal epithelial cells reveals novel candidate regulatory elements for lung function	Expression profiling by array Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	4	PAIR	Ann Harris	Nov 08, 2013
GSE17616	A map of open chromatin in human pancreatic islets	Genome binding/occupancy profiling by high throughput sequencing Genome binding/occupancy profiling by genome tiling array	Homo sapiens	5	BED PAIR WIG SRA Run Selector	Kyle Jeffrie Gaulton	Jan 31, 2010
GSE31842	An Esrrb and Nanog Cell Fate Regulatory Module Controlled by Feed Forward Loop Interactions.	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by array Methylation profiling by genome tiling array	Mus musculus	50	CEL PAIR WIG	Ana Sevilla	Feb 25, 2021
GSE55741	Analysis of the impact of FOXA1 expression on MDA::ER E2-sensitive transcriptomes and ER cistromes	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	31	PAIR WIG	Raphaël Métivier	Dec 11, 2022
GSE36737	BEAF-32 insulator regulates gene expression of genes involved in cell polarity and neoplastic growth.	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by array	Drosophila melanogaster	14	PAIR	Gurudatta Baraka Vishwanathan	Jul 06, 2012
GSE28115	CBX3 Regulates Efficient RNA Processing Genome Wide	Genome binding/occupancy profiling by genome tiling array Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens	39	BED BEDGRAPH GFF GPR PAIR SRA Run Selector	Bing Ren	May 24, 2012
GSE25933	Caenorhabditis elegans chromosome arms are anchored to the nuclear membrane via discontinuous association with LEM-2	Genome binding/occupancy profiling by genome tiling array Genome binding/occupancy profiling by high throughput sequencing Expression profiling by genome tiling array	Caenorhabditis elegans	31	BED GFF GFF3 PAIR SAM TXT WIG	DCC modENCODE	Dec 22, 2010
GSE55270	ChIP-chip from HEK293-RPF-1 stable transfectants expressing the HA-tagged RPF-1 transcription factor	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	4	GFF PAIR	gabriele bucci	Sep 06, 2016
GSE42741	Chromatin Immunoprecipitation of Nuclear Pore Proteins in C. elegans	Genome binding/occupancy profiling by genome tiling array Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Caenorhabditis elegans	23	BEDGRAPH PAIR WIG	Kohta Ikegami	Sep 05, 2013
GSE50488	Chromatin organization in NPP-13 knockdown C. elegans embryos	Genome binding/occupancy profiling by genome tiling array Genome binding/occupancy profiling by high throughput sequencing	Caenorhabditis elegans	11	PAIR WIG	Kohta Ikegami	Aug 15, 2016
GSE30206	DNA binding factors shape the mouse methylome at distal regulatory regions.	Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Genome binding/occupancy profiling by array Expression profiling by high throughput sequencing	Mus musculus	23	PAIR WIG	Dirk Schuebeler	Dec 09, 2011
GSE42478	Defining a molecular roadmap of cellular reprogramming into iPS cells	Expression profiling by array Non-coding RNA profiling by array Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by genome tiling array	Betapolyomavirus hominis Betapolyomavirus macacae Homo sapiens Human alphaherpesvirus 1 Human alphaherpesvirus 2 Human betaherpesvirus 5 Human gammaherpesvirus 8 Human immunodeficiency virus 1 JC polyomavirus Merkel cell polyomavirus Murid betaherpesvirus 1 Murid gammaherpesvirus 4 Mus musculus Rattus norvegicus human gammaherpesvirus 4	61	BIGWIG CEL PAIR TXT	Ben S. Wittner	Dec 20, 2012
GSE37865	Differential Chromatin Binding of the Drosophila Dosage Compensation Complex	Genome binding/occupancy profiling by genome tiling array Genome binding/occupancy profiling by high throughput sequencing	Drosophila melanogaster	27	PAIR	Tobias Straub	Dec 11, 2012
GSE55426	Domains of genomewide gene expression dysregulation in Down syndrome	Methylation profiling by genome tiling array Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens Mus musculus	42	BW PAIR TXT	Audrey Letourneau	Apr 08, 2014
GSE26833	Dual functions of Tet1 in transcriptional regulation in mouse embryonic stem cells	Expression profiling by array Genome binding/occupancy profiling by genome tiling array Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by genome tiling array	Mus musculus	38	CEL PAIR TXT	Hao Wu	Mar 30, 2011
GSE27436	Dynamic hydroxymethylation of DNA marks differentiation-driven enhancers	Expression profiling by array Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	19	PAIR SAM WIG	Aurelien Serandour	Jun 04, 2012
GSE21068	Estrogen-mediated Epigenetic Repression of Large Chromosomal Regions through DNA Looping	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by genome tiling array Expression profiling by array	Homo sapiens Rattus norvegicus	12	GFF PAIR TXT WIG SRA Run Selector	Pei-Yin Hsu	Apr 29, 2010
GSE33704	Forkhead transcription factors establish origin timing and long-range clustering in S. cerevisiae	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Genome binding/occupancy profiling by genome tiling array	Saccharomyces cerevisiae	56	PAIR	Simon Robert Vincent Knott	Jan 20, 2012