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3017 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Genome binding/occupancy profiling by high throughput sequencing			NARROWPEAK
GSE93431	Two independent modes of chromosome organization are revealed by cohesin removal	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	32	BW CSV HDF5 NARROWPEAK TSV TXT SRA Run Selector	Nezar Abdennur	Jun 10, 2017
GSE151013	Mechanistic dissection of dominant AIRE mutations in mouse models reveals evidence for AIRE auto-regulation	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	102	BED BROADPEAK NARROWPEAK	Jakub Abramson	Aug 30, 2021
GSE165550	Mechanistic dissection of dominant AIRE mutations in mouse models reveals AIRE auto-regulation [ChIP-Seq]	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	16	NARROWPEAK SRA Run Selector	Jakub Abramson	Sep 01, 2021
GSE192875	Transcriptional regulation of the thymus master regulator Foxn1	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	72	BROADPEAK BW NARROWPEAK	Jakub Abramson	Aug 03, 2022
GSE204741	Transcriptional regulation of the thymus master regulator Foxn1 [ChIP-seq]	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	8	NARROWPEAK	Jakub Abramson	Aug 03, 2022
GSE171070	Epigenetic therapy suppresses tumour growth by rewiring ER-mediated long-range chromatin interactions in ER+ endocrine-resistant breast cancer [ChIP-seq]	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	23	NARROWPEAK SRA Run Selector	Joanna Achinger-Kawecka	Dec 12, 2021
GSE171074	The potential of epigenetic therapy to target the 3D epigenome in endocrine-resistant breast cancer	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by array Other Methylation profiling by high throughput sequencing	Homo sapiens	88	BED BW HIC IDAT NARROWPEAK TXT	Joanna Achinger-Kawecka	Dec 12, 2021
GSE189944	Fine-tuned KDM1A alternative splicing regulates human cardiomyogenesis through an enzymatic-independent mechanism	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	68	NARROWPEAK XLSX SRA Run Selector	Antonio Adamo	Jul 01, 2022
GSE173201	Genomic characterization of cisplatin response uncovers priming of cispla-tin-induced genes in a resistant cell line	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens	18	BW CSV NARROWPEAK SRA Run Selector	Sheera Adar	Jun 07, 2021
GSE114557	cisTopic: cis-regulatory topic modelling on single-cell ATAC-seq data	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	771	BW NARROWPEAK TXT SRA Run Selector	Stein Aerts	Feb 18, 2019
GSE163697	Decoding gene regulation in the fly brain	Genome binding/occupancy profiling by high throughput sequencing	Drosophila melanogaster	58	BED BW GFF NARROWPEAK RDATA RDS SRA Run Selector	Stein Aerts	Aug 10, 2021
GSE121589	Dissecting the Individual and Collective Regenerative Behavior of Muscle Stem Cells During Aging	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	90	BIGWIG NARROWPEAK TAGALIGN TSV TXT SRA Run Selector	Carlos Aguilar	Aug 30, 2019
GSE131968	Matrix stiffness induces a tumorigenic phenotype in mammary epithelium through changes in chromatin accessibility	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	20	BIGWIG NARROWPEAK TXT SRA Run Selector	Carlos Aguilar	May 31, 2019
GSE147672	Single-cell epigenomic identification of inherited risk loci in Alzheimer’s and Parkinson’s disease	Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens	162	BED BIGWIG NARROWPEAK RDS TSV SRA Run Selector	Carlos Aguilar	Jul 26, 2020
GSE262348	NEMO Knockout Drives Variations in Gene Expression Regenerative Trajectory and Induces Chromatin Remodeling in murine muscle satellite cells during healing from traumatic injury	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	20	BIGWIG NARROWPEAK TSV TXT	Carlos Aguilar	Apr 01, 2024
GSE142810	CRISPRi screen of prostate cancer associated risk cis-regulatory elements [ChIP-seq]	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	1	NARROWPEAK SRA Run Selector	Musaddeque Ahmed	Dec 16, 2020
GSE142811	CRISPRi screen of prostate cancer associated risk cis-regulatory elements	Other Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	29	NARROWPEAK	Musaddeque Ahmed	Dec 16, 2020
GSE267375	Multi-omics analysis of longitudinal patient samples reveals the molecular mechanism of AML progression [ATAC-seq]	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	4	NARROWPEAK	Nisar Ahmed	Jul 31, 2024
GSE118159	Epigenetic basis of CD4 T cel help for memory CD8 T cell formation	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	18	BROADPEAK NARROWPEAK SRA Run Selector	Tomasz Ahrends	Oct 23, 2019
GSE118160	CD4+ T-cell help creates effector memory CTLs with innate and help-independent recall capacities	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	30	BROADPEAK NARROWPEAK	Tomasz Ahrends	Oct 23, 2019