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646 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Genome binding/occupancy profiling by high throughput sequencing			MTX
GSE210736	Chronic hypoxia remodels the tumor microenvironment to support glioma stem cell growth [scRNAseq+Multiome]	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	39	H5 MTX TSV TXT XLSX	James Nicholson	Apr 03, 2024
GSE195611	3D chromatin architecture of drug-tolerant cancer cells at single-cell resolution	Expression profiling by high throughput sequencing Other Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	410	MTX TSV TXT	Yufan Zhou	Aug 14, 2024
GSE227750	3D genome organization coordinates key regulators of lineage specification in mammary epithelial cells	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	150	BW MTX TXT	Yunshun Chen	Sep 08, 2023
GSE225554	A Cellular Atlas of the Down Syndrome Brain Identifies Accelerated Oligodendrocyte Precursor Cell Senescence	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	12	H5 MTX TBI TSV	Brian Kalish	Sep 14, 2023
GSE133417	A Congenital Anemia Dissociates the Pleiotropic Functions of Master Transcription Factor GATA1	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	60	BW MTX NARROWPEAK TSV	Caleb Lareau	Dec 31, 2021
GSE212002	A Critical Role of RUNX1 in Governing Megakaryocyte-Primed Hematopoietic Stem Cell Differentiation	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	120	BW MTX TSV TXT	Chen Wang	Jan 20, 2023
GSE253593	A Lactate-induced SREBF2-dependent genetic program drives an immunotolerant dendritic cell population during cancer progression	Expression profiling by high throughput sequencing Other Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	15	JPG MTX TSV	Brent Hanks	May 13, 2024
GSE253589	A Lactate-induced SREBF2-dependent genetic program drives an immunotolerant dendritic cell population during cancer progression [scATAC-seq]	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	2	BED MTX TSV	Brent Hanks	May 13, 2024
GSE210639	A Mesp1-dependent developmental breakpoint in transcriptional and epigenomic specification of early cardiac precursors	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	24	MTX TSV	Alexis Leigh Krup	Apr 07, 2023
GSE202967	A Multi-Organoid Platform Identifies CIART as a Key Factor for SARS-CoV-2 Infection.	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens	84	BW MTX NARROWPEAK TSV	Shuibing Chen	Dec 07, 2022
GSE219110	A SOX9-B7x axis safeguards dedifferentiated tumor cells from immune surveillance to drive breast cancer progression	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	16	BW MTX NARROWPEAK TSV TXT	Wenjun Guo	Oct 16, 2023
GSE216481	A Transcription Factor Atlas of Directed Differentiation	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Escherichia coli Homo sapiens Lentivirus	281	CSV MTX TSV	Julia Joung	Jan 05, 2023
GSE155882	A Transcriptional Switch Governs Fibroblast Activation in Heart Disease	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Other	Mus musculus	56	BED BIGWIG BW CSV MTX TSV WIG SRA Run Selector	Pawel Przytycki	Apr 08, 2021
GSE225809	A Unified Framework for Systematic Identification of Post-Transcriptional Regulatory Modules	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens	21	CSV MTX TSV	Hani Goodarzi	Feb 21, 2024
GSE165659	A cell atlas of chromatin accessibility across 25 adult human tissues	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	70	MTX TXT SRA Run Selector	Bing Ren	Feb 16, 2021
GSE268321	A cellular disease model towards gene therapy of TGM1-dependent Lamellar Ichthyosis	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	2	MTX TSV	Oriana Romano	Jul 29, 2024
GSE245549	A cis-regulatory module underlies retinal ganglion cell genesis and axonogenesis	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	48	BW MTX TAB TSV	Shuchang Liu	Jun 06, 2024
GSE245538	A cis-regulatory module underlies retinal ganglion cell genesis and axonogenesis [Set1.Sc-ATAC-Seq retina E14.5 WT retina]	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	2	MTX TSV	Shuchang Liu	Jun 06, 2024
GSE247692	A distinct human cell type expressing MHCII and RORγt with dual characteristics of dendritic cells and type 3 innate lymphoid cells	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	15	MTX TBI TSV	Alina Ulezko Antonova	Dec 19, 2023
GSE142523	A distinct subpopulation of follicular helper T (Tfh) cells promotes Tfr cell differentiation by producing Sostdc1	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	11	BW MTX TSV TXT XLS SRA Run Selector	Huiping Lu	Aug 21, 2020