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637 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Genome binding/occupancy profiling by high throughput sequencing			MTX
GSE87064	The Dynamic Epigenetic Landscape of the Retina During Development, Reprogramming, and Tumorigenesis	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing Other	Homo sapiens Mus musculus	868	BED BW MTX TSV TXT	Beisi Xu	May 03, 2017
GSE98600	BCG reprogramming of hematopoietic stem cells generates protective innate immunity against tuberculosis	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	85	MTX TXT	Luis Barreiro	Dec 13, 2017
GSE98448	Topological demarcation by HMGB2 is disrupted early upon senescence entry and induces CTCF clustering across cell types	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Other	Homo sapiens	53	BEDPE MTX TSV TXT	Milos Nikolic	Apr 25, 2018
GSE111839	Transcriptional and Epigenomic Landscapes of CNS and non-CNS Vascular Endothelial Cells	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	42	BW MTX NARROWPEAK TAR TSV TXT SRA Run Selector	Mark F Sabbagh	Sep 06, 2018
GSE118252	The Lineage-Defining Transcription Factors SOX2 and NKX2-1 Determine Lung Cancer Cell Fate and Shape the Tumor Immune Microenvironment	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	42	BW MTX TSV	Trudy Oliver	Oct 16, 2018
GSE121599	Metabolic heterogeneity underlies reciprocal fates of TH17 cell stemness and plasticity	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	24	MTX TSV	Hongbo Chi	Dec 27, 2018
GSE118726	The NSL complex–mediated nucleosome landscape is required to maintain transcription fidelity and suppression of transcription noise	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Drosophila melanogaster	57	BW MTX TSV SRA Run Selector	Asifa Akhtar	Jan 13, 2019
GSE126074	Simultaneous profiling of transcriptome and chromatin accessibility in single nucleus	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	36	MTX TSV SRA Run Selector	Song Chen	Feb 05, 2019
GSE122871	Single-cell Transcriptomics Resolves Intermediate Glial Progenitors and Uncovers a Pivotal Determinant of Cell Fate and Gliomagenesis	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	229	BEDGRAPH MTX NARROWPEAK TSV TXT SRA Run Selector	Richard Lu	Apr 11, 2019
GSE129675	Critical Role of Jumonji Domain of JMJD1C in MLL-rearranged leukemia	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	54	BIGWIG MTX TSV TXT	Nan Zhu	Apr 12, 2019
GSE119943	Single-Cell Transcriptomics Identifies TOX as a Key Transcriptional Regulator of Progenitor-Like CD8 T Cells in Chronic Infection	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	60	BW MTX TSV	Tuoqi Wu	Apr 16, 2019
GSE129785	Massively parallel single-cell chromatin landscapes of human immune cell development and intratumoral T cell exhaustion	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	67	MTX TSV TXT SRA Run Selector	Preyas Shah	Apr 16, 2019
GSE131996	Neuropeptide CGRP limits ILC2 responses and constrains type 2 inflammation	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	54	BW MTX TSV SRA Run Selector	Yuka Kanno	Jun 25, 2019
GSE134413	PTPN2 regulates the generation of exhausted CD8+ T cell subpopulations and restrains tumor immunity	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	49	MTX TDF TSV	Brian Christopher Miller	Jul 17, 2019
GSE134732	Mitigating antagonism between transcription and proliferation allows near-deterministic cellular reprogramming	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	42	BW MTX TSV	Kate E Galloway	Jul 24, 2019
GSE120974	Single-cell RNA-seq Reveals a Developmental Hierarchy and Oncogenic Networks for Initiation of Medulloblastoma	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	30	FPKM_TRACKING MTX TSV TXT WIG	Richard Lu	Aug 30, 2019
GSE131675	Generating in vivo somatic mouse mosaics with locus-specific, stably-integrated transgenic elements for studies of gene function in development and tumorigenesis	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	13	BED BW CSV MTX TSV	AGCT Core	Sep 10, 2019
GSE131873	Generating in vivo somatic mouse mosaics with locus-specific, stably-integrated transgenic elements for studies of gene function in development and tumorigenesis [scATAC-seq]	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	2	BED MTX TSV SRA Run Selector	AGCT Core	Sep 10, 2019
GSE129628	Transcriptional control of lung alveolar type 1 cell development and maintenance by NK Homeobox 2-1	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	21	CLOUPE MTX TSV TXT	Danielle R. Little	Sep 29, 2019
GSE121527	Reconstruction of the global neural crest gene regulatory network in vivo	Genome binding/occupancy profiling by high throughput sequencing Other Expression profiling by high throughput sequencing	Gallus gallus	213	BED MTX TSV TXT	Tatjana Sauka-Spengler	Oct 09, 2019