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60 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Genome binding/occupancy profiling by high throughput sequencing			MCOOL
GSE138543	Suppression of liquid-liquid phase separation by 1,6-hexanediol partially compromises the 3D genome organization in living cells	Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens	22	BED BEDPE BW MCOOL TXT SRA Run Selector	Mikhail Magnitov	Mar 22, 2021
GSE168233	SETDB1 Fuels the Lung Cancer Phenotype by Modulating Epigenome, 3D Genome Organization, and Chromatin Mechanical Properties	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	40	BED BW MCOOL TXT SRA Run Selector	Mikhail Magnitov	Mar 29, 2022
GSE178348	TCF-1 mediates 3D genome reconfiguration during T cell development	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	40	BED BW HIC MCOOL TXT	Wenliang Wang	Feb 24, 2022
GSE179184	Mapping the 3D genome and epigenome in SARS-CoV-2 infected human cells	Genome binding/occupancy profiling by high throughput sequencing Other Expression profiling by high throughput sequencing	Homo sapiens	65	BED BW MCOOL TSV SRA Run Selector	Ruoyu Wang	Jul 23, 2021
GSE181104	Rapid redistribution and extensive co-binding of NANOG and GATA6 at shared regulatory elements underlie specification of divergent cell fates	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	128	BED BIGWIG BW MCOOL NARROWPEAK	Pedro P Rocha	Jul 29, 2021
GSE184129	Nucleome programming is required for the foundation of totipotency in mammalian germline development [Hi-C]	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	12	BED BW FANC MCOOL SRA Run Selector	Yukihiro Yabuta	Jun 15, 2022
GSE186599	TULIPs decorate the three-dimensional genome of PFA ependymoma	Other Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	160	BED BEDGRAPH BEDPE BROADPEAK BW GTF HIC MCOOL RDATA TDF TSV WIG	Marco Gallo	Jul 05, 2024
GSE210289	Igh and Igk loci use different folding principles for V gene recombination due to distinct chromosomal architectures of pro-B and pre-B cells	Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	36	BED BEDGRAPH HIC MCOOL TXT	Meinrad Busslinger	Jan 15, 2023
GSE214707	Chromosome-level organization of the regulatory genome in the Drosophila nervous system	Other Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Drosophila melanogaster Drosophila virilis	34	BED CSV H5 MCOOL TSV	Maria Cristina Gambetta	Aug 01, 2023
GSE215172	The 3D chromatin landscape of rhabdomyosarcoma [HiC]	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	8	BED MCOOL	Benjamin Stanton	Jun 13, 2023
GSE225087	Genome-wide nucleosome-resolution map of promoter-centered interactions in human cells corroborates the enhancer-promoter looping model	Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens	6	BED BEDPE BW MCOOL	Arkadiy Golov	Dec 24, 2023
GSE229966	Extreme structural heterogeneity rewires glioblastoma chromosomes to sustain patient-specific transcriptional programs	Genome binding/occupancy profiling by high throughput sequencing Other Expression profiling by high throughput sequencing	Homo sapiens	74	BED BW MCOOL TXT	Argyris Papantonis	Mar 18, 2024
GSE238256	Rapid and synchronous chemical induction of replicative-like senescence via a small molecule inhibitor	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens	51	BED BW MCOOL MTX TSV TXT	Argyris Papantonis	Apr 24, 2024
GSE247254	YY1-controlled regulatory connectivity and transcription are influenced by the cell cycle	Genome binding/occupancy profiling by high throughput sequencing Other Expression profiling by high throughput sequencing	Mus musculus	121	BED BEDPE BW MCOOL TXT	Jessica C Lam	Jun 17, 2024
GSE251935	Tunable DNMT1 degradation reveals cooperation of DNMT1 and DNMT3B in regulating DNA methylation dynamics and genome organization	Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens	14	BED MCOOL PQ TSV	Nezar Abdennur	Feb 01, 2024
GSE260914	ZNF143 is a transcriptional regulator of nuclear-encoded mitochondrial genes that acts independently of looping and CTCF	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	78	BED BW HIC MCOOL TSV TXT	Mikhail Magnitov	Mar 08, 2024
GSE266750	GATA6 is a Novel Regulator of Gene Expression and 3D Genome in Colorectal Cancer	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens Mus musculus	75	BED BIGWIG MCOOL TXT	Feng Yue	Dec 19, 2024
GSE123245	Setdb1 regulates Cohesin at H3K9me3-independent topological domains	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	37	BEDGRAPH HIC MCOOL TXT	Chadi El Farran	Dec 01, 2020
GSE214811	Stage-specific erythroid cell three-dimensional chromatin architecture and transcription factors binding provide insight of human erythropoiesis	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Other	Homo sapiens	99	BEDGRAPH BIGWIG MCOOL MTX TAR TSV	Dong Li	May 06, 2023
GSE228880	RIF1 regulates early replication timing in murine B cells.	Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	69	BEDGRAPH BW HIC MCOOL	Tobias Neumann	Jun 13, 2023