GEO Browser - GEO

Series

Samples

Platforms

DataSets

41 series

Export

Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Genome binding/occupancy profiling by high throughput sequencing			MATRIX
GSE75070	RUNX1 contributes to higher-order chromatin organization and gene regulation in breast cancer cells.	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens	14	BED MATRIX TSV TXT SRA Run Selector	Rasim Barutcu	Aug 23, 2016
GSE84581	Dynamic Control of X-Chromosome Conformation and Repression by a Histone H4K20 Demethylase	Expression profiling by high throughput sequencing Other Genome binding/occupancy profiling by high throughput sequencing	Caenorhabditis elegans	13	BW CSV MATRIX TXT SRA Run Selector	Barbara J. Meyer	Aug 31, 2017
GSE101717	A TAD boundary at the HoxD locus segregates opposing limb regulatory landscapes and their target genes	Other Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	91	BEDGRAPH MATRIX NARROWPEAK TAR TXT	Eddie Rodríguez-Carballo	Dec 22, 2017
GSE95301	Chromatin-Bound ARGONAUTE 1 Promotes Gene Transcription in Response to Various Stimuli in Arabidopsis	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Arabidopsis thaliana	94	BEDGRAPH BIGWIG MATRIX TXT SRA Run Selector	Yijun Qi	Jan 04, 2018
GSE106690	Dynamic reorganization of nuclear architecture during human cardiogenesis	Other Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	36	BED BEDGRAPH BW MATRIX NARROWPEAK TXT	Charles Murry	Jan 04, 2018
GSE104129	Rev-erbα Dynamically Modulates Chromatin Organization to Control Circadian Gene Transcription	Other Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	28	BED MATRIX TXT SRA Run Selector	Sajid A Marhon	Feb 09, 2018
GSE104427	A TAD boundary is preserved upon deletion of the CTCF-rich Firre locus [RNA-Seq, HiC_C2C12, ChIP-Seq]	Expression profiling by high throughput sequencing Other Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	27	BED BEDGRAPH MATRIX TXT SRA Run Selector	Rasim Barutcu	Feb 12, 2018
GSE98015	Enhancer profiling in metastatic cancer	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens	72	BED BW MATRIX TXT	Sakari Vanharanta	Jun 12, 2018
GSE117210	Architectural alterations in enhancer repertoires orchestrate senescence-associated secretory phenotype profile	Other Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	33	BW MATRIX	Chao Zhang	Jul 18, 2018
GSE120294	Cohesin HiChIP datasets of pluripotent and surface ectoderm cells with and without p63	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	12	BED MATRIX TXT SRA Run Selector	Anthony E Oro	Nov 06, 2018
GSE112136	Mammalian ISWI and SWI/SNF selectively mediate binding of distinct groups of transcription factors	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing Other	Mus musculus	90	BED MATRIX TSV WIG	Dirk Schuebeler	Apr 18, 2019
GSE114950	The effects of Arabidopsis genome duplication on the chromatin organization and transcriptional regulation	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Arabidopsis thaliana	28	BROADPEAK MATRIX NARROWPEAK TXT SRA Run Selector	Hui Zhang	May 25, 2019
GSE128568	X chromosome domain architecture regulates Caenorhabditis elegans lifespan but not dosage compensation	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Caenorhabditis elegans	26	BW MATRIX TXT	Elphege P Nora	Sep 05, 2019
GSE142167	Promoter nucleosome positioning in dendritic cells (DCs) and fibroblasts measured by ChIP-MNase-seq	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	15	BED MATRIX R SRA Run Selector	Dominic van Essen	Feb 04, 2020
GSE142170	Promoter nucleosome positioning in dendritic cells (DCs) and fibroblasts	Expression profiling by array Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	24	CEL MATRIX	Dominic van Essen	Feb 04, 2020
GSE152994	Oral Regeneration Is the Default Pathway Triggered by Injury in Hydra	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Hydra vulgaris	113	BED BW CSV MATRIX RDATA SRA Run Selector	Jack Cazet	Jul 01, 2020
GSE130140	Cancer-specific CTCF binding facilitates oncogenic transcriptional dysregulation	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other Methylation profiling by high throughput sequencing	Homo sapiens	92	BED BW COV MATRIX NARROWPEAK SF TAR TXT SRA Run Selector	Zhenjia Wang	Aug 19, 2020
GSE133928	A topological atlas reveals layers of genome reorganization in colorectal cancer	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Other	Homo sapiens	175	BED BEDPE BW CPG MATRIX TXT SRA Run Selector	Alejandro Reyes	Aug 24, 2020
GSE124409	Nuclear peripheral chromatin-lamin B1 interaction is required for global integrity of chromatin architecture and dynamics in human cells	Expression profiling by high throughput sequencing Other Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	20	BED BW MATRIX TAR TXT SRA Run Selector	Mengfan Li	Nov 08, 2020
GSE123806	Homotypic clustering of L1 and B1 repeats organizes 3D genome	Other Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	8	BW MATRIX SRA Run Selector	jinlong lu	Dec 04, 2020