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371 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Genome binding/occupancy profiling by high throughput sequencing			HIC
GSE155503	DNA methylation-linked chromatin accessibility affects genomic architecture in Arabidopsis	Genome binding/occupancy profiling by high throughput sequencing Other	Arabidopsis thaliana	50	BW HIC SRA Run Selector	Zhenhui Zhong	Jan 25, 2021
GSE160414	Linker histones mediate sequence-specific regulation of chromosomal organization and H3K27me3 enrichment over genes and telomeric repeats	Expression profiling by high throughput sequencing Other Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana	51	BIGWIG BW HIC TXT	Fredy BARNECHE	Sep 10, 2023
GSE201841	Nodulin homeobox (NDX) is required for heterochromatin homeostasis in Arabidopsis	Genome binding/occupancy profiling by high throughput sequencing Other Non-coding RNA profiling by high throughput sequencing Expression profiling by high throughput sequencing	Arabidopsis thaliana	30	BW HIC	Márton Miskei	Aug 09, 2022
GSE245010	The landscape of the histone-organized chromatin of Bdellovibrionota bacteria	Genome binding/occupancy profiling by high throughput sequencing Other	Bdellovibrio bacteriovorus	27	BIGWIG HIC	Georgi Kolev Marinov	Dec 06, 2023
GSE181751	The chromatin organization of a chlorarachniophyte nucleomorph genome	Genome binding/occupancy profiling by high throughput sequencing Other	Bigelowiella natans	5	BIGWIG HIC SRA Run Selector	Georgi Kolev Marinov	Jan 25, 2022
GSE188851	Topoisomerases I and II facilitate the translocation of condensin DC in C. elegans	Genome binding/occupancy profiling by high throughput sequencing Other Expression profiling by high throughput sequencing	Caenorhabditis briggsae Caenorhabditis elegans	147	BW HIC TAB	Ana Karina Morao	Nov 16, 2021
GSE132640	SIP Identifies a Network of Dosage Compensation Condensin I Loops	Genome binding/occupancy profiling by high throughput sequencing Other	Caenorhabditis elegans	5	HIC SRA Run Selector	M Jordan Rowley	Feb 04, 2020
GSE168803	Condensin DC spreads linearly and bidirectionally from recruitment sites to create loop-anchored TADs in C. elegans	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Caenorhabditis elegans	150	BEDGRAPH BW HIC TXT	Jun Kim	Mar 23, 2021
GSE169458	Mobility of condensin DC is key to its function in repressing transcription	Expression profiling by high throughput sequencing Other Genome binding/occupancy profiling by high throughput sequencing	Caenorhabditis elegans	63	BW HIC TXT	Jun Kim	Sep 22, 2021
GSE116862	Chromatin structure dynamics during human cardiomyocyte differention reveals a role of HERV-H in demarcating TAD boundaries.	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Callithrix jacchus Homo sapiens Pan paniscus Pan troglodytes	115	BW HIC RPKM TXT SRA Run Selector	Bing Ren	Jul 09, 2019
GSE186958	Chromatin structure dynamics during human cardiomyocyte differention	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Callithrix jacchus Homo sapiens Pan paniscus Pan troglodytes	115	BW HIC RPKM TXT	Bing Ren	Nov 01, 2021
GSE162140	A Pig BodyMap Transcriptome Reveals Diverse Tissue Physiologies and Evolutionary Dynamics of Transcription [non-human Hi-C]	Genome binding/occupancy profiling by high throughput sequencing	Canis lupus familiaris Felis catus Oryctolagus cuniculus Ovis aries Rattus norvegicus Sus scrofa	16	HIC TXT SRA Run Selector	jin long	Apr 20, 2021
GSE162148	A Pig BodyMap Transcriptome Reveals Diverse Tissue Physiologies and Evolutionary Dynamics of Transcription	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Canis lupus familiaris Cavia porcellus Felis catus Gallus gallus Homo sapiens Macaca mulatta Mus musculus Oryctolagus cuniculus Ovis aries Rattus norvegicus Sus scrofa	553	HIC TXT	jin long	Apr 20, 2021
GSE134055	A map of cis-regulatory elements and 3D genome structures in zebrafish	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Danio rerio	204	BED BW HIC NARROWPEAK TXT SRA Run Selector	Yu Luan	Sep 04, 2020
GSE156099	CTCF knockout in zebrafish induces alterations in regulatory landscapes and developmental gene expression	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Danio rerio	78	BEDGRAPH BW HIC NARROWPEAK TXT	José M. Santos-Pereira	Aug 02, 2021
GSE175706	CTCF knockout in zebrafish induces alterations in regulatory landscapes and developmental gene expression [Hi-ChIP]	Genome binding/occupancy profiling by high throughput sequencing	Danio rerio	4	HIC SRA Run Selector	José M. Santos-Pereira	Aug 02, 2021
GSE212252	Balanced SET levels favor the correct enhancer repertoire during cell fate acquisition	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Danio rerio Homo sapiens Mus musculus	80	BROADPEAK HIC NARROWPEAK TAB	Luca Massimino	Sep 12, 2022
GSE89244	Evolutionary Principles Predict 3D Chromatin Organization	Genome binding/occupancy profiling by high throughput sequencing Other	Drosophila melanogaster	18	BW HIC SRA Run Selector	M Jordan Rowley	Aug 14, 2017
GSE110061	Direct DNA crosslinking with CAP-C uncovers transcription-dependent chromatin organization at high resolution	Genome binding/occupancy profiling by high throughput sequencing Other	Drosophila melanogaster Homo sapiens Mus musculus	76	BIGWIG HIC NARROWPEAK TXT SRA Run Selector	Youzhi Cheng	Aug 22, 2020
GSE118047	Ecdysone-induced 3D chromatin reorganization involves active enhancers bound by Pipsqueak and Polycomb	Genome binding/occupancy profiling by high throughput sequencing Other	Drosophila melanogaster	20	BW HIC SRA Run Selector	M Jordan Rowley	Jul 16, 2019