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373 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Genome binding/occupancy profiling by high throughput sequencing			HIC
GSE82144	Myc regulates chromatin decompaction and nuclear architecture during B cell activation	Genome binding/occupancy profiling by high throughput sequencing Other Expression profiling by high throughput sequencing	Mus musculus	258	BW HIC TXT SRA Run Selector	Seolkyoung Jung	Aug 10, 2017
GSE89244	Evolutionary Principles Predict 3D Chromatin Organization	Genome binding/occupancy profiling by high throughput sequencing Other	Drosophila melanogaster	18	BW HIC SRA Run Selector	M Jordan Rowley	Aug 14, 2017
GSE94452	Promoter-proximal CTCF binding promotes distal enhancer-dependent gene activation	Other Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	174	HIC	Bing Ren	May 01, 2018
GSE95116	The nuclear matrix associating protein HNRNPU functions as a key regulator of 3D genome architecture	Expression profiling by high throughput sequencing Other Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	28	BW HIC TXT	Bo Wen	Dec 03, 2017
GSE96693	Loss of CTCF reveals basic properties of post-mitotic epigenomes and induces heart failure	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	17	GTF HIC NARROWPEAK	Tom Vondriska	Aug 30, 2017
GSE98119	The energetics and physiological impact of cohesin extrusion	Other Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	352	BED BEDGRAPH BW HIC NARROWPEAK TXT SRA Run Selector	Seolkyoung Jung	May 01, 2018
GSE102884	Topologically associating domains and chromatin loops depend on cohesin and are regulated by CTCF, WAPL and PDS5 proteins	Other Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	30	HIC WIG SRA Run Selector	Roman R Stocsits	Dec 07, 2017
GSE103477	Transcription elongation regulates genome 3D structure	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Other	Homo sapiens	253	BED BEDGRAPH HIC TXT SRA Run Selector	Christopher Benner	Aug 23, 2018
GSE104334	Cohesin loss eliminates all loop domains	Other Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens	132	BW HIC TDF	Suhas Rao	Oct 05, 2017
GSE104579	DNA methylation state is associated with the formation of loops and links in hematopoietic stem cells	Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other Expression profiling by high throughput sequencing	Homo sapiens	18	BED BW HIC	Jianzhong Su	Nov 24, 2017
GSE105028	Architectural proteins and pluripotency factors cooperate to orchestrate the transcriptional response of hESCs to temperature stress	Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens	93	BED BW HIC SRA Run Selector	Victor Corces	Aug 03, 2018
GSE107217	Xist Deletional Analysis Reveals an Interdependency between Xist RNA and Polycomb Complexes for Spreading along the Inactive X	Other Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	50	BW HIC TXT SRA Run Selector	Hongjae Sunwoo	Mar 01, 2019
GSE107447	Altered chromosomal topology drives oncogenic programs in SDH-deficient GISTs	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing Other	Homo sapiens	100	BED BW CSV HIC TXT	Yotam Drier	Oct 16, 2019
GSE108869	An alternative CTCF isoform antagonizes canonical CTCF occupancy and changes chromatin architecture to promote apoptosis	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	30	BW HIC NARROWPEAK TSV SRA Run Selector	Kaimeng Huang	Jan 12, 2019
GSE109924	TAD cliques shape the 4-dimensional genome during dual lineage terminal differentiation	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens	34	BED BW FPKM_TRACKING HIC SRA Run Selector	Philippe Collas	Feb 23, 2019
GSE110061	Direct DNA crosslinking with CAP-C uncovers transcription-dependent chromatin organization at high resolution	Genome binding/occupancy profiling by high throughput sequencing Other	Drosophila melanogaster Homo sapiens Mus musculus	76	BIGWIG HIC NARROWPEAK TXT SRA Run Selector	Youzhi Cheng	Aug 22, 2020
GSE110761	Chromatin Capture Identifies SCARB1-LAG3 Proinflammatory Cardiovascular Disease Gene Networks	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens	31	HIC	Annabelle Rodriguez	Oct 04, 2019
GSE110901	Targeting enhancer switching overcomes non-genetic drug resistance in acute myeloid leukaemia	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	86	HIC NARROWPEAK	Mark Dawson	May 21, 2019
GSE111537	Chronic loss of STAG2 leads to altered chromatin structure contributing to deregulated transcription in AML	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens	22	BW HIC SRA Run Selector	Ken Mills	Mar 31, 2020
GSE111930	An endogenous retrovirus-derived long non-coding RNA promotes fetal cardiomyocyte migration in primates	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Gorilla gorilla Homo sapiens Macaca mulatta Mus musculus Pan troglodytes	60	BW HIC TDF TXT SRA Run Selector	Lei Tian	Aug 11, 2020