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22 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Genome binding/occupancy profiling by high throughput sequencing			H5AD
GSE175533	Revisiting the Hayflick Limit: Insights from an Integrated Analysis of Changing Transcripts, Proteins, Metabolites, and Chromatin	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	147	BED BW H5AD XLSX	David G Hendrickson	May 26, 2021
GSE186614	OCA-T1 and OCA-T2 are coactivators of POU2F3 in the tuft cell lineage	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	79	BIGWIG H5 H5AD NARROWPEAK TXT SRA Run Selector	Xiaoli Sky Wu	May 01, 2022
GSE194028	Systematic benchmarking of single-cell ATAC sequencing protocols	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens	56	H5AD MTX TBI TSV	Stein Aerts	May 22, 2023
GSE194122	A sandbox for prediction and integration of DNA, RNA, and proteins in single cells	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	38	H5AD	Daniel B Burkhardt	Jan 24, 2022
GSE202495	Improving stem cell-derived pancreatic islets using single-cell multiome-inferred regulomes [Childhood snATAC-seq]	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	7	H5AD MTX TXT	Maike Sander	Mar 02, 2023
GSE202498	Improving stem cell-derived pancreatic islets using single-cell multiome-inferred regulomes [SC-islet_snATAC]	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	5	H5AD MTX TXT	Maike Sander	Mar 02, 2023
GSE211785	Spatially resolved human kidney multi-omics single cell atlas highlights the key role of fibrotic microenvironment in kidney disease progression.	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	80	H5AD JSON RDS TIFF TXT	Jonathan Levinsohn	Jan 17, 2024
GSE217066	A Transcription Factor Atlas of Directed Differentiation [SHAREseq_210715_combinatorial]	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	12	CSV H5AD	Julia Joung	Jan 05, 2023
GSE217215	A Transcription Factor Atlas of Directed Differentiation [SHAREseq_201218_ATAC]	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens	36	CSV H5AD RDS TSV SRA Run Selector	Julia Joung	Jan 05, 2023
GSE234788	Single-cell multiome sequencing of human kidney anatomical regions with SHARE-seq	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens	7	BED CSV H5 H5AD PY TSV TXT	Benjamin Humphreys	Feb 15, 2024
GSE243917	Multimodal gene expression and chromatin accessibility profiles at the single-cell level of synovial tissue from individuals with arthritis	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	24	H5AD	Anika Gupta	Sep 27, 2023
GSE254205	APOE4/4 is linked to damaging lipid droplets in Alzheimer's microglia	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	102	H5AD	Tony Wyss-Coray	Feb 01, 2024
GSE168776	Mapping and modeling the genomic basis of differential RNA isoform expression at single-cell resolution with LR-Split-seq	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	16	CSV GTF H5AD MTX NARROWPEAK SRA Run Selector	Elisabeth Rebboah	Mar 12, 2021
GSE207698	Epigenetic plasticity cooperates with emergent cell-cell interactions to drive neoplastic tissue remodeling in the pancreas [ATAC-seq]	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	4	H5 H5AD TXT	Cassandra Burdziak	Apr 27, 2023
GSE207969	Terminal differentiation and persistence of effector regulatory T cells essential for the prevention of intestinal inflammation	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	33	CSV H5AD MTX TAR TSV	Stanislav Dikiy	Jul 11, 2023
GSE211863	Probing cell identity hierarchies by fate titration and collision during direct reprogramming [scRNA-seq & scATAC-seq]	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	2	BED H5 H5AD TSV	Bob Hersbach	Sep 16, 2022
GSE236556	Control of nutrient uptake by IRF4 orchestrates innate immune memory	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	6	CSV H5AD	Endi K Santosa	Aug 02, 2023
GSE240753	Unveiling the Impact of Arsenic Toxicity on Immune Cells in Atherosclerotic Plaques: Insights from Single-Cell Multi-Omics Profiling	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	6	H5AD	Yang Xiuhui	Oct 03, 2023
GSE246791	Single-cell analysis of chromatin accessibility in the adult mouse brain	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	228	CSV H5AD TXT	Songpeng Zu	Nov 02, 2023
GSE253345	iPain identifies Senescence of Nociceptors as a therapeutical target for chronic pain treatment	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	9	H5 H5AD TSV	Saida Hadjab	Jul 19, 2024