GEO Browser - GEO

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193 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Genome binding/occupancy profiling by high throughput sequencing			GFF
GSE218878	Chromatin profile of Anthoceros agrestis	Genome binding/occupancy profiling by high throughput sequencing	Anthoceros agrestis	18	BROADPEAK BW FASTA GFF GFF3 XLSX	Tetsuya Hisanaga	Nov 10, 2023
GSE19824	Genome-wide evolutionary analysis of eukaryotic DNA methylation	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Apis mellifera Bombyx mori Chlorella variabilis Ciona intestinalis Coprinopsis cinerea Drosophila melanogaster Laccaria bicolor Nematostella vectensis Oryza sativa Phycomyces blakesleeanus Physcomitrium patens Rhodonia placenta Selaginella moellendorffii Tetraodon nigroviridis Tribolium castaneum Uncinocarpus reesii Volvox carteri	33	GFF TXT SRA Run Selector	Toshiro Nishimura	Apr 15, 2010
GSE21301	Orchestration of development by the bifunctional transcription factor, APETALA2	Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana	4	BED GFF SRA Run Selector	Felix Ott	Apr 13, 2010
GSE41302	DDM1 and RdDM are the major regulators of transposon DNA methylation in Arabidopsis	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana	33	GFF SRA Run Selector	Toshiro Nishimura	Apr 17, 2013
GSE96994	DDM1/Lsh remodelers allow methylation of DNA wrapped in nucleosomes	Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Third-party reanalysis	Arabidopsis thaliana	15	BED BW GFF TXT SRA Run Selector	David B. Lyons	Nov 15, 2017
GSE122394	DNA methylation and histone H1 jointly repress transposable elements and aberrant intragenic transcripts	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Other	Arabidopsis thaliana	132	BW GFF SRA Run Selector	Jaemyung Choi	Nov 20, 2019
GSE176526	Linker histone H1 drives heterochromatin condensation via phase separation in Arabidopsis	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Other	Arabidopsis thaliana	14	BED GFF TXT SRA Run Selector	Xiaoqi Feng	Feb 15, 2024
GSE179796	Histone H1 prevents non-CG methylation-mediated small RNA biogenesis in Arabidopsis heterochromatin	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Arabidopsis thaliana	62	BW GFF SRA Run Selector	Jaemyung Choi	Dec 01, 2021
GSE46692	Dnmt1-Independent CG Methylation Contributes to Nucleosome Positioning in Diverse Eukaryotes	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Aureococcus anophagefferens Bathycoccus prasinos Cryptococcus neoformans var. grubii Cyanidioschyzon merolae Emiliania huxleyi Fragilariopsis cylindrus Leishmania major Micromonas pusilla Ostreococcus sp. 'lucimarinus' Phaeodactylum tricornutum Thalassiosira pseudonana	26	GFF GTF SRA Run Selector	Jason T Huff	Mar 13, 2014
GSE47342	ChIP-seq in oat-maize additional lines using CenH3 antibody	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Avena sativa/Zea mays addition line	14	GFF TXT SRA Run Selector	Yufeng Wu	Sep 01, 2013
GSE17454	Identification of transcription factor CEH-14 binding sites in C.elegans	Genome binding/occupancy profiling by high throughput sequencing	Caenorhabditis elegans	3	GFF TXT SRA Run Selector	Flora Vaccarino	Jul 31, 2009
GSE25933	Caenorhabditis elegans chromosome arms are anchored to the nuclear membrane via discontinuous association with LEM-2	Genome binding/occupancy profiling by genome tiling array Genome binding/occupancy profiling by high throughput sequencing Expression profiling by genome tiling array	Caenorhabditis elegans	31	BED GFF GFF3 PAIR SAM TXT WIG	DCC modENCODE	Dec 22, 2010
GSE28756	seq-AB1791_H3_N2_L3	Genome binding/occupancy profiling by high throughput sequencing	Caenorhabditis elegans	6	GFF WIG SRA Run Selector	Tristan De Buysscher	May 02, 2011
GSE28757	seq-AR0144_H3_144_N2_L3	Genome binding/occupancy profiling by high throughput sequencing	Caenorhabditis elegans	4	GFF WIG SRA Run Selector	Tristan De Buysscher	May 02, 2011
GSE28758	seq-BH00001_LIN52_N2_L3	Genome binding/occupancy profiling by high throughput sequencing	Caenorhabditis elegans	4	GFF WIG SRA Run Selector	Tristan De Buysscher	May 02, 2011
GSE28759	seq-BH00003_LIN37_N2_L3	Genome binding/occupancy profiling by high throughput sequencing	Caenorhabditis elegans	4	GFF WIG SRA Run Selector	Tristan De Buysscher	May 02, 2011
GSE28760	seq-BH00004_LIN54_N2_L3	Genome binding/occupancy profiling by high throughput sequencing	Caenorhabditis elegans	4	GFF WIG SRA Run Selector	Tristan De Buysscher	May 02, 2011
GSE28761	seq-BH00005_LIN9_N2_L3	Genome binding/occupancy profiling by high throughput sequencing	Caenorhabditis elegans	4	GFF WIG SRA Run Selector	Tristan De Buysscher	May 02, 2011
GSE28762	seq-JA00001_HTZ1_N2_L3	Genome binding/occupancy profiling by high throughput sequencing	Caenorhabditis elegans	6	GFF WIG SRA Run Selector	Tristan De Buysscher	May 02, 2011
GSE28763	seq-JA00011_LIN35_N2_L3	Genome binding/occupancy profiling by high throughput sequencing	Caenorhabditis elegans	4	GFF WIG SRA Run Selector	Tristan De Buysscher	May 02, 2011