GEO Browser - GEO

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77 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Genome binding/occupancy profiling by high throughput sequencing			FA
GSE21512	Simple combinations of lineage-determining transcription factors prime cis-regulatory elements required for macrophage and B cell identities	Expression profiling by array Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	52	BED FA TXT SRA Run Selector	Christopher Benner	May 27, 2010
GSE21978	A global network of transcription factors, involving E2A, EBF1 and FOXO1, that orchestrates the B cell fate	Expression profiling by array Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	30	BED FA TXT SRA Run Selector	Christopher Benner	Jun 13, 2010
GSE23619	Mechanisms Establishing TLR4-Responsive Activation States of Inflammatory Response Genes (Illumina sequencing data)	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	23	BED FA TXT SRA Run Selector	Christopher Benner	Jan 01, 2011
GSE23622	Mechanisms Establishing TLR4-Responsive Activation States of Inflammatory Response Genes	Expression profiling by array Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	55	BED FA TXT	Christopher Benner	Jan 01, 2011
GSE27823	Reprogramming Transcriptional Responses through Functionally-Distinct Classes of Enhancers in Prostate Cancer Cells [ChIP-Seq, Gro-Seq]	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens	30	BED BEDGRAPH FA SRA Run Selector	Christopher Benner	May 15, 2011
GSE27824	Reprogramming Transcriptional Responses through Functionally-Distinct Classes of Enhancers in Prostate Cancer Cells	Expression profiling by array Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens	42	BED BEDGRAPH FA	Christopher Benner	May 15, 2011
GSE199431	Position-dependent function of human sequence-specific transcription factors	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Chlorocebus sabaeus Homo sapiens Mus musculus	56	BED FA TSV TXT	Christopher Benner	Apr 26, 2024
GSE176360	Single-cell chromatin landscapes supporting fibroblast polarization drives skin regeneration versus fibrosis in adult reindeer	Genome binding/occupancy profiling by high throughput sequencing	Rangifer tarandus	8	BED FA GTF H5 SRA Run Selector	Jeff Biernaskie	Dec 08, 2022
GSE155677	Multimodal profiling of the transcriptional regulatory landscape of the developing mouse cortex identifies Neurog2 as a key epigenome remodeler	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Other	Escherichia coli Mus musculus	36	BED BEDGRAPH BW FA MTX PICKLE TAR TSV TXT SRA Run Selector	Boyan Bonev	Jan 27, 2022
GSE159871	A gain-of-function single nucleotide variant creates a new promoter which acts as an orientation-dependent enhancer-blocker (ATAC-seq)	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	28	BW FA SRA Run Selector	Yavor Bozhilov	Mar 25, 2021
GSE122479	ChIP-seq identified the regulation of genes by the quorum-sensing regulator OpaR in Vibrio parahaemolyticus	Genome binding/occupancy profiling by high throughput sequencing	Vibrio parahaemolyticus	4	FA WIG SRA Run Selector	San-Chi Chang	Oct 27, 2020
GSE100643	Centromeres license the mitotic condensation of yeast chromosome arms	Genome binding/occupancy profiling by high throughput sequencing	Saccharomyces cerevisiae	51	BED BW FA GTF TXT SRA Run Selector	Pierre Chymkowitch	Oct 11, 2018
GSE65889	Novel nucleosomal particles containing core histones and linker DNA but no histone H1	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus Saccharomyces cerevisiae Synthetic plasmid	31	BW FA TXT SRA Run Selector	David Johannes Clark	Sep 23, 2015
GSE103445	Natural regulatory mutations elevate fetal globin via disruption of BCL11A or ZBTB7A binding	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	16	BED BEDGRAPH FA GENOME TXT SRA Run Selector	Merlin Crossley	Jan 29, 2018
GSE145678	FUS-CHOP and ISWI chromatin remodeling in human myxoid liposarcoma	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	18	BW FA NARROWPEAK TXT SRA Run Selector	Ian Johnathan Davis	Feb 21, 2022
GSE55914	RNA-RNA interactions enable specific targeting of noncoding RNAs to nascent pre-mRNAs and chromatin sites	Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	46	BIGWIG FA TDF SRA Run Selector	Jesse Engreitz	Sep 01, 2014
GSE226502	Epigenetic evolution of the Ly49 gene family	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Other	Mus musculus Rattus norvegicus	65	BEDGRAPH BW CSV FA HIC TXT	Changxu Fan	Apr 20, 2024
GSE106751	Genome wide map of High-salt Recovered Sequences (HRS) in mouse embryonic stem cells (ESC)	Other Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	9	BEDGRAPH BIGWIG FA TXT SRA Run Selector	Thierry Forné	Apr 09, 2018
GSE130273	Sir2 suppresses transcription-mediated displacement of Mcm2-7 replicative helicases at the ribosomal DNA repeats	Genome binding/occupancy profiling by high throughput sequencing Other	Saccharomyces cerevisiae	28	FA TXT SRA Run Selector	Eric Jan Foss	May 08, 2019
GSE220696	Chromatin plasticity contributes to neuronal selection during memory allocation	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	6	CSV FA GTF MTX TSV	Johannes Gräff	Jul 26, 2024